Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NYR91_RS18780 Genome accession   NZ_CP103784
Coordinates   3649958..3650077 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain RO-NN-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3644958..3655077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS18760 (NYR91_18760) albG 3645121..3645822 (+) 702 WP_014478292.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NYR91_RS18765 (NYR91_18765) ywhL 3645828..3647204 (-) 1377 WP_014478293.1 YncE family protein -
  NYR91_RS18770 (NYR91_18770) ywhK 3647244..3648599 (-) 1356 WP_014478294.1 YncE family protein -
  NYR91_RS20635 - 3648596..3648826 (-) 231 WP_041519575.1 hypothetical protein -
  NYR91_RS18775 (NYR91_18775) rapF 3648829..3649974 (+) 1146 WP_014478296.1 response regulator aspartate phosphatase RapF Regulator
  NYR91_RS18780 (NYR91_18780) phrF 3649958..3650077 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NYR91_RS18785 (NYR91_18785) ywhH 3650176..3650649 (+) 474 Protein_3652 YbaK/EbsC family protein -
  NYR91_RS18790 (NYR91_18790) speB 3650680..3651552 (-) 873 WP_003227545.1 agmatinase -
  NYR91_RS18795 (NYR91_18795) speE 3651613..3652443 (-) 831 WP_003227543.1 spermidine synthase -
  NYR91_RS18800 (NYR91_18800) pbpG 3652646..3654721 (+) 2076 WP_014478298.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=725052 NYR91_RS18780 WP_009968329.1 3649958..3650077(+) (phrF) [Bacillus subtilis strain RO-NN-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=725052 NYR91_RS18780 WP_009968329.1 3649958..3650077(+) (phrF) [Bacillus subtilis strain RO-NN-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATCTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487