Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NYR91_RS12775 Genome accession   NZ_CP103784
Coordinates   2487743..2488360 (-) Length   205 a.a.
NCBI ID   WP_014477388.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2482743..2493360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS12745 (NYR91_12745) rpsT 2483045..2483311 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  NYR91_RS12750 (NYR91_12750) holA 2483326..2484369 (-) 1044 WP_014477385.1 DNA polymerase III subunit delta -
  NYR91_RS12755 (NYR91_12755) - 2484409..2484558 (-) 150 WP_003229985.1 hypothetical protein -
  NYR91_RS12760 (NYR91_12760) yqzM 2484599..2484733 (+) 135 WP_003229983.1 YqzM family protein -
  NYR91_RS12765 (NYR91_12765) comEC 2484773..2487103 (-) 2331 WP_041519416.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYR91_RS12770 (NYR91_12770) comEB 2487107..2487676 (-) 570 WP_014477387.1 ComE operon protein 2 -
  NYR91_RS12775 (NYR91_12775) comEA 2487743..2488360 (-) 618 WP_014477388.1 competence protein ComEA Machinery gene
  NYR91_RS12780 (NYR91_12780) comER 2488444..2489265 (+) 822 WP_014477389.1 late competence protein ComER -
  NYR91_RS12785 (NYR91_12785) yqeM 2489331..2490074 (-) 744 WP_014477390.1 class I SAM-dependent methyltransferase -
  NYR91_RS12790 (NYR91_12790) rsfS 2490071..2490427 (-) 357 WP_014477391.1 ribosome silencing factor -
  NYR91_RS12795 (NYR91_12795) yqeK 2490445..2491005 (-) 561 WP_014477392.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NYR91_RS12800 (NYR91_12800) nadD 2490995..2491564 (-) 570 WP_014477393.1 nicotinate-nucleotide adenylyltransferase -
  NYR91_RS12805 (NYR91_12805) yhbY 2491576..2491866 (-) 291 WP_014477394.1 ribosome assembly RNA-binding protein YhbY -
  NYR91_RS12810 (NYR91_12810) aroE 2491860..2492702 (-) 843 WP_014477395.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21894.67 Da        Isoelectric Point: 4.7354

>NTDB_id=725029 NYR91_RS12775 WP_014477388.1 2487743..2488360(-) (comEA) [Bacillus subtilis strain RO-NN-1]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNEIIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTKEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGAGGSVQSDGGKGALVNINTATLEELQDISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=725029 NYR91_RS12775 WP_014477388.1 2487743..2488360(-) (comEA) [Bacillus subtilis strain RO-NN-1]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTGGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAATAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGTACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCAGGCGGGACCAAAGAACAAGCAGACGAAGCGCAAGTAAATTTAGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGCCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAATTACAAGACATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGACGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

98.049

100

0.98
  comEA Staphylococcus aureus MW2

36.818

100

0.395
  comEA Staphylococcus aureus N315

36.364

100

0.39