Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NYR91_RS12335 Genome accession   NZ_CP103784
Coordinates   2407277..2408347 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain RO-NN-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2402277..2413347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS12290 (NYR91_12290) tapA 2402753..2403514 (-) 762 WP_014477326.1 amyloid fiber anchoring/assembly protein TapA -
  NYR91_RS12295 (NYR91_12295) yqzG 2403788..2404114 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NYR91_RS12300 (NYR91_12300) spoIITA 2404156..2404335 (-) 180 WP_014477327.1 YqzE family protein -
  NYR91_RS12305 (NYR91_12305) comGG 2404407..2404781 (-) 375 WP_014477328.1 ComG operon protein ComGG Machinery gene
  NYR91_RS12310 (NYR91_12310) comGF 2404782..2405165 (-) 384 WP_041519396.1 ComG operon protein ComGF Machinery gene
  NYR91_RS12315 (NYR91_12315) comGE 2405191..2405538 (-) 348 WP_014477330.1 ComG operon protein 5 Machinery gene
  NYR91_RS12320 (NYR91_12320) comGD 2405522..2405953 (-) 432 WP_014477331.1 comG operon protein ComGD Machinery gene
  NYR91_RS12325 (NYR91_12325) comGC 2405943..2406239 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  NYR91_RS12330 (NYR91_12330) comGB 2406253..2407290 (-) 1038 WP_014477333.1 comG operon protein ComGB Machinery gene
  NYR91_RS12335 (NYR91_12335) comGA 2407277..2408347 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NYR91_RS12340 (NYR91_12340) corA 2408758..2409711 (-) 954 WP_004399136.1 magnesium transporter CorA -
  NYR91_RS12345 (NYR91_12345) yqhB 2409854..2411182 (+) 1329 WP_014477335.1 hemolysin family protein -
  NYR91_RS12350 (NYR91_12350) rsbRD 2411234..2412070 (-) 837 WP_014477336.1 RsbT co-antagonist protein RsbRD -
  NYR91_RS12360 (NYR91_12360) mgsR 2412294..2412674 (-) 381 WP_014477337.1 transcriptional regulator MgsR -
  NYR91_RS12365 (NYR91_12365) yqgY 2412906..2413151 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=725025 NYR91_RS12335 WP_004399124.1 2407277..2408347(-) (comGA) [Bacillus subtilis strain RO-NN-1]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=725025 NYR91_RS12335 WP_004399124.1 2407277..2408347(-) (comGA) [Bacillus subtilis strain RO-NN-1]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGTTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGTAATGTTCATTTAAGAATGTCCACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1