Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NYR92_RS13400 Genome accession   NZ_CP103783
Coordinates   2556601..2557032 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551601..2562032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS13350 (NYR92_13350) sinI 2551795..2551968 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NYR92_RS13355 (NYR92_13355) sinR 2552002..2552337 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NYR92_RS13360 (NYR92_13360) tasA 2552430..2553215 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  NYR92_RS13365 (NYR92_13365) sipW 2553279..2553851 (-) 573 WP_003246088.1 signal peptidase I SipW -
  NYR92_RS13370 (NYR92_13370) tapA 2553835..2554596 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  NYR92_RS13375 (NYR92_13375) yqzG 2554868..2555194 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NYR92_RS13380 (NYR92_13380) spoIITA 2555236..2555415 (-) 180 WP_003230176.1 YqzE family protein -
  NYR92_RS13385 (NYR92_13385) comGG 2555486..2555860 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NYR92_RS13390 (NYR92_13390) comGF 2555861..2556244 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NYR92_RS13395 (NYR92_13395) comGE 2556270..2556617 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NYR92_RS13400 (NYR92_13400) comGD 2556601..2557032 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NYR92_RS13405 (NYR92_13405) comGC 2557022..2557318 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NYR92_RS13410 (NYR92_13410) comGB 2557332..2558369 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  NYR92_RS13415 (NYR92_13415) comGA 2558356..2559426 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NYR92_RS13420 (NYR92_13420) corA 2559838..2560791 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=724941 NYR92_RS13400 WP_004398628.1 2556601..2557032(-) (comGD) [Bacillus subtilis subsp. subtilis str. 168]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=724941 NYR92_RS13400 WP_004398628.1 2556601..2557032(-) (comGD) [Bacillus subtilis subsp. subtilis str. 168]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1