Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NYR92_RS13355 Genome accession   NZ_CP103783
Coordinates   2552002..2552337 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547002..2557337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR92_RS13335 (NYR92_13335) gcvT 2547594..2548682 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  NYR92_RS13340 (NYR92_13340) hepAA 2549124..2550797 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  NYR92_RS13345 (NYR92_13345) yqhG 2550818..2551612 (+) 795 WP_003230200.1 YqhG family protein -
  NYR92_RS13350 (NYR92_13350) sinI 2551795..2551968 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NYR92_RS13355 (NYR92_13355) sinR 2552002..2552337 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NYR92_RS13360 (NYR92_13360) tasA 2552430..2553215 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  NYR92_RS13365 (NYR92_13365) sipW 2553279..2553851 (-) 573 WP_003246088.1 signal peptidase I SipW -
  NYR92_RS13370 (NYR92_13370) tapA 2553835..2554596 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  NYR92_RS13375 (NYR92_13375) yqzG 2554868..2555194 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NYR92_RS13380 (NYR92_13380) spoIITA 2555236..2555415 (-) 180 WP_003230176.1 YqzE family protein -
  NYR92_RS13385 (NYR92_13385) comGG 2555486..2555860 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NYR92_RS13390 (NYR92_13390) comGF 2555861..2556244 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NYR92_RS13395 (NYR92_13395) comGE 2556270..2556617 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NYR92_RS13400 (NYR92_13400) comGD 2556601..2557032 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NYR92_RS13405 (NYR92_13405) comGC 2557022..2557318 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=724937 NYR92_RS13355 WP_003226345.1 2552002..2552337(+) (sinR) [Bacillus subtilis subsp. subtilis str. 168]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=724937 NYR92_RS13355 WP_003226345.1 2552002..2552337(+) (sinR) [Bacillus subtilis subsp. subtilis str. 168]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1