Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYR48_RS17170 Genome accession   NZ_CP103782
Coordinates   3475827..3476516 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DA4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470827..3481516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS17135 - 3471024..3471506 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYR48_RS17140 flgM 3471521..3471787 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR48_RS17145 - 3471857..3472276 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NYR48_RS17150 comFC 3472350..3473039 (-) 690 WP_259425650.1 phosphoribosyltransferase family protein Machinery gene
  NYR48_RS17155 - 3473045..3473329 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  NYR48_RS17160 comFA 3473387..3474772 (-) 1386 WP_259424626.1 DEAD/DEAH box helicase Machinery gene
  NYR48_RS17165 - 3474881..3475729 (-) 849 WP_259424627.1 DegV family protein -
  NYR48_RS17170 degU 3475827..3476516 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR48_RS17175 degS 3476593..3477756 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYR48_RS17180 - 3477979..3478626 (+) 648 WP_259424628.1 YigZ family protein -
  NYR48_RS17185 - 3478631..3479824 (+) 1194 WP_259424629.1 LCP family protein -
  NYR48_RS17190 - 3479923..3480999 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=724882 NYR48_RS17170 WP_003219701.1 3475827..3476516(-) (degU) [Bacillus velezensis strain DA4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=724882 NYR48_RS17170 WP_003219701.1 3475827..3476516(-) (degU) [Bacillus velezensis strain DA4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1