Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYR48_RS17150 Genome accession   NZ_CP103782
Coordinates   3472350..3473039 (-) Length   229 a.a.
NCBI ID   WP_259425650.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3467350..3478039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS17115 fliW 3467440..3467871 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NYR48_RS17120 - 3467901..3468470 (-) 570 WP_007407476.1 DUF6470 family protein -
  NYR48_RS17125 flgL 3468562..3469479 (-) 918 WP_259424625.1 flagellar hook-associated protein FlgL -
  NYR48_RS17130 flgK 3469491..3471008 (-) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  NYR48_RS17135 - 3471024..3471506 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYR48_RS17140 flgM 3471521..3471787 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR48_RS17145 - 3471857..3472276 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  NYR48_RS17150 comFC 3472350..3473039 (-) 690 WP_259425650.1 phosphoribosyltransferase family protein Machinery gene
  NYR48_RS17155 - 3473045..3473329 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  NYR48_RS17160 comFA 3473387..3474772 (-) 1386 WP_259424626.1 DEAD/DEAH box helicase Machinery gene
  NYR48_RS17165 - 3474881..3475729 (-) 849 WP_259424627.1 DegV family protein -
  NYR48_RS17170 degU 3475827..3476516 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR48_RS17175 degS 3476593..3477756 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25241.89 Da        Isoelectric Point: 8.0801

>NTDB_id=724880 NYR48_RS17150 WP_259425650.1 3472350..3473039(-) (comFC) [Bacillus velezensis strain DA4]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVF
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=724880 NYR48_RS17150 WP_259425650.1 3472350..3473039(-) (comFC) [Bacillus velezensis strain DA4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATTT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59