Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   NYR48_RS15195 Genome accession   NZ_CP103782
Coordinates   3091061..3091201 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain DA4     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3086061..3096201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS15170 - 3086358..3086741 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  NYR48_RS15175 comA 3086763..3087407 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NYR48_RS15180 comP 3087488..3089791 (-) 2304 WP_259424462.1 histidine kinase Regulator
  NYR48_RS15190 comQ 3089944..3090930 (-) 987 WP_283160452.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NYR48_RS15195 degQ 3091061..3091201 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NYR48_RS15200 - 3091663..3092004 (+) 342 WP_015418107.1 hypothetical protein -
  NYR48_RS15205 - 3092011..3093234 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  NYR48_RS15210 - 3093364..3094830 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  NYR48_RS15215 - 3094848..3095399 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  NYR48_RS15220 - 3095496..3095894 (-) 399 WP_020956272.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=724877 NYR48_RS15195 WP_003152043.1 3091061..3091201(-) (degQ) [Bacillus velezensis strain DA4]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=724877 NYR48_RS15195 WP_003152043.1 3091061..3091201(-) (degQ) [Bacillus velezensis strain DA4]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891