Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PXV46_RS04385 Genome accession   NZ_CP119113
Coordinates   884591..885673 (+) Length   360 a.a.
NCBI ID   WP_014532468.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GENOMIC22-002     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 879591..890673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV46_RS04365 (PXV46_04365) - 879756..881708 (+) 1953 WP_000163792.1 hypothetical protein -
  PXV46_RS04370 (PXV46_04370) dfrG 881780..882277 (-) 498 WP_000868795.1 trimethoprim-resistant dihydrofolate reductase DfrG -
  PXV46_RS04375 (PXV46_04375) - 882576..883217 (-) 642 WP_000192949.1 YigZ family protein -
  PXV46_RS04380 (PXV46_04380) fakB1 883361..884227 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  PXV46_RS04385 (PXV46_04385) comFA 884591..885673 (+) 1083 WP_014532468.1 DEAD/DEAH box helicase Machinery gene
  PXV46_RS04390 (PXV46_04390) - 885666..886340 (+) 675 WP_001057961.1 ComF family protein -
  PXV46_RS04395 (PXV46_04395) raiA 886401..886973 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  PXV46_RS04400 (PXV46_04400) secA 887387..889918 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  PXV46_RS04405 (PXV46_04405) - 889960..890079 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42024.50 Da        Isoelectric Point: 9.6802

>NTDB_id=724875 PXV46_RS04385 WP_014532468.1 884591..885673(+) (comFA) [Staphylococcus aureus strain GENOMIC22-002]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=724875 PXV46_RS04385 WP_014532468.1 884591..885673(+) (comFA) [Staphylococcus aureus strain GENOMIC22-002]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369