Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYR48_RS15175 Genome accession   NZ_CP103782
Coordinates   3086763..3087407 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain DA4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081763..3092407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS15140 - 3082948..3083379 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  NYR48_RS15145 - 3083379..3083720 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NYR48_RS15150 - 3083713..3085194 (+) 1482 WP_043020757.1 Na+/H+ antiporter subunit D -
  NYR48_RS15155 - 3085200..3085676 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  NYR48_RS15160 - 3085676..3085960 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NYR48_RS15165 mnhG 3085944..3086318 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NYR48_RS15170 - 3086358..3086741 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  NYR48_RS15175 comA 3086763..3087407 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NYR48_RS15180 comP 3087488..3089791 (-) 2304 WP_259424462.1 histidine kinase Regulator
  NYR48_RS15190 comQ 3089944..3090930 (-) 987 WP_283160452.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NYR48_RS15195 degQ 3091061..3091201 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NYR48_RS15200 - 3091663..3092004 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=724874 NYR48_RS15175 WP_003152052.1 3086763..3087407(-) (comA) [Bacillus velezensis strain DA4]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=724874 NYR48_RS15175 WP_003152052.1 3086763..3087407(-) (comA) [Bacillus velezensis strain DA4]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864