Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PY718_RS07905 Genome accession   NZ_CP119011
Coordinates   1636673..1637263 (+) Length   196 a.a.
NCBI ID   WP_000633675.1    Uniprot ID   -
Organism   Escherichia coli strain CE0007a     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1631673..1642263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY718_RS07890 (PY718_07890) ilvN 1632916..1633206 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  PY718_RS07895 (PY718_07895) - 1634284..1634766 (+) 483 WP_038428612.1 hypothetical protein -
  PY718_RS07900 (PY718_07900) - 1635042..1636511 (+) 1470 WP_001309856.1 hypothetical protein -
  PY718_RS07905 (PY718_07905) letA 1636673..1637263 (+) 591 WP_000633675.1 transcriptional regulator UhpA Regulator
  PY718_RS07910 (PY718_07910) uhpB 1637263..1638765 (+) 1503 WP_001322651.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  PY718_RS07915 (PY718_07915) uhpC 1638775..1640094 (+) 1320 WP_001309854.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  PY718_RS07920 (PY718_07920) uhpT 1640232..1641623 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20905.30 Da        Isoelectric Point: 5.9982

>NTDB_id=724718 PY718_RS07905 WP_000633675.1 1636673..1637263(+) (letA) [Escherichia coli strain CE0007a]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELISAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=724718 PY718_RS07905 WP_000633675.1 1636673..1637263(+) (letA) [Escherichia coli strain CE0007a]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTTCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTAGGTTTGTCGCCAAAAACTGTGCATGTACATCGTGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(136-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38

100

0.388
  letA Legionella pneumophila strain ERS1305867

38

100

0.388
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378