Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR93_RS14755 Genome accession   NZ_CP103769
Coordinates   3068474..3068764 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063474..3073764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS14740 (NYR93_14745) - 3063697..3065022 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  NYR93_RS14745 (NYR93_14750) - 3065157..3065924 (-) 768 WP_004264700.1 TatD family hydrolase -
  NYR93_RS14750 (NYR93_14755) metG 3066000..3067991 (-) 1992 WP_004264704.1 methionine--tRNA ligase -
  NYR93_RS14755 (NYR93_14760) abrB 3068474..3068764 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NYR93_RS14760 (NYR93_14765) rsmI 3068814..3069695 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR93_RS14765 (NYR93_14770) - 3069670..3069969 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  NYR93_RS14770 (NYR93_14775) - 3069956..3070699 (-) 744 WP_264254711.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NYR93_RS14775 (NYR93_14780) yabA 3070760..3071119 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  NYR93_RS14780 (NYR93_14785) ricT 3071134..3071961 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NYR93_RS14785 (NYR93_14790) holB 3071964..3072953 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  NYR93_RS14790 (NYR93_14795) - 3072965..3073405 (-) 441 WP_004264730.1 YaaR family protein -
  NYR93_RS14795 (NYR93_14800) darA 3073418..3073747 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=724652 NYR93_RS14755 WP_169510469.1 3068474..3068764(+) (abrB) [Bacillus velezensis strain ML61]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=724652 NYR93_RS14755 WP_169510469.1 3068474..3068764(+) (abrB) [Bacillus velezensis strain ML61]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979