Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   NYR93_RS13045 Genome accession   NZ_CP103769
Coordinates   2731520..2731639 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain ML61     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726520..2736639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS13020 (NYR93_13025) - 2726759..2727517 (-) 759 WP_264254691.1 ABC transporter ATP-binding protein -
  NYR93_RS13025 (NYR93_13030) - 2727511..2728458 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  NYR93_RS13030 (NYR93_13035) ceuB 2728448..2729401 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  NYR93_RS13035 (NYR93_13040) - 2729816..2731180 (+) 1365 WP_014304341.1 aspartate kinase -
  NYR93_RS13040 (NYR93_13045) - 2731260..2731370 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  NYR93_RS13045 (NYR93_13050) phrC 2731520..2731639 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NYR93_RS13050 (NYR93_13055) rapC 2731623..2732771 (-) 1149 WP_003156336.1 Rap family tetratricopeptide repeat protein Regulator
  NYR93_RS13055 (NYR93_13060) - 2732924..2734357 (-) 1434 WP_161625271.1 HAMP domain-containing sensor histidine kinase -
  NYR93_RS13060 (NYR93_13065) - 2734344..2735027 (-) 684 WP_264254692.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=724645 NYR93_RS13045 WP_003156334.1 2731520..2731639(-) (phrC) [Bacillus velezensis strain ML61]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=724645 NYR93_RS13045 WP_003156334.1 2731520..2731639(-) (phrC) [Bacillus velezensis strain ML61]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718