Detailed information NTG0724646

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: NYR93_RS13050
• Genome accession: NZ_CP103769
• Coordinates: 2731623..2732771 (-)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain ML61
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2726623..2737771

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR93_RS13020 (NYR93_13025)	-	2726759..2727517 (-)	759	WP_264254691.1	ABC transporter ATP-binding protein	-
NYR93_RS13025 (NYR93_13030)	-	2727511..2728458 (-)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
NYR93_RS13030 (NYR93_13035)	ceuB	2728448..2729401 (-)	954	WP_003156332.1	ABC transporter permease	Machinery gene
NYR93_RS13035 (NYR93_13040)	-	2729816..2731180 (+)	1365	WP_014304341.1	aspartate kinase	-
NYR93_RS13040 (NYR93_13045)	-	2731260..2731370 (+)	111	WP_369719092.1	YjcZ family sporulation protein	-
NYR93_RS13045 (NYR93_13050)	phrC	2731520..2731639 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
NYR93_RS13050 (NYR93_13055)	rapC	2731623..2732771 (-)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
NYR93_RS13055 (NYR93_13060)	-	2732924..2734357 (-)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
NYR93_RS13060 (NYR93_13065)	-	2734344..2735027 (-)	684	WP_264254692.1	response regulator transcription factor	-
NYR93_RS13065 (NYR93_13070)	-	2735240..2736676 (+)	1437	WP_264254693.1	ABC transporter permease	-
NYR93_RS13070 (NYR93_13075)	-	2736691..2737374 (+)	684	WP_264254694.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=724646 NYR93_RS13050 WP_003156336.1 2731623..2732771(-) (rapC) [Bacillus velezensis strain ML61]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=724646 NYR93_RS13050 WP_003156336.1 2731623..2732771(-) (rapC) [Bacillus velezensis strain ML61]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568