Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NYR93_RS03430 Genome accession   NZ_CP103769
Coordinates   652022..652330 (+) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647022..657330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS03410 (NYR93_03410) - 647334..648635 (-) 1302 WP_264254869.1 hemolysin family protein -
  NYR93_RS03415 (NYR93_03415) - 648781..649731 (+) 951 WP_003153082.1 magnesium transporter CorA family protein -
  NYR93_RS03420 (NYR93_03420) comGA 649923..650993 (+) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  NYR93_RS03425 (NYR93_03425) comGB 650980..652017 (+) 1038 WP_014305414.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYR93_RS03430 (NYR93_03430) comGC 652022..652330 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NYR93_RS03435 (NYR93_03435) comGD 652320..652757 (+) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYR93_RS03440 (NYR93_03440) comGE 652741..653055 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  NYR93_RS03445 (NYR93_03445) comGF 653069..653464 (+) 396 WP_264254870.1 competence type IV pilus minor pilin ComGF -
  NYR93_RS03450 (NYR93_03450) comGG 653465..653842 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYR93_RS03455 (NYR93_03455) - 653899..654078 (+) 180 WP_003153093.1 YqzE family protein -
  NYR93_RS03460 (NYR93_03460) - 654118..654447 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  NYR93_RS03465 (NYR93_03465) tapA 654706..655377 (+) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  NYR93_RS03470 (NYR93_03470) sipW 655349..655933 (+) 585 WP_012117977.1 signal peptidase I SipW -
  NYR93_RS03475 (NYR93_03475) tasA 655997..656782 (+) 786 WP_003153102.1 biofilm matrix protein TasA -
  NYR93_RS03480 (NYR93_03480) sinR 656830..657165 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=724610 NYR93_RS03430 WP_003153087.1 652022..652330(+) (comGC) [Bacillus velezensis strain ML61]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=724610 NYR93_RS03430 WP_003153087.1 652022..652330(+) (comGC) [Bacillus velezensis strain ML61]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402