Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PY722_RS03940 Genome accession   NZ_CP119006
Coordinates   814787..815377 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain CE0021a     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 809787..820377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY722_RS03925 (PY722_03925) uhpT 810427..811782 (-) 1356 WP_250869815.1 hexose-6-phosphate:phosphate antiporter -
  PY722_RS03930 (PY722_03930) uhpC 811956..813275 (-) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  PY722_RS03935 (PY722_03935) uhpB 813285..814787 (-) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  PY722_RS03940 (PY722_03940) letA 814787..815377 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  PY722_RS03945 (PY722_03945) ilvN 815452..815742 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  PY722_RS03950 (PY722_03950) ilvB 815746..817434 (-) 1689 WP_000168480.1 acetolactate synthase large subunit -
  PY722_RS03955 (PY722_03955) ivbL 817540..817638 (-) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  PY722_RS03960 (PY722_03960) tisB 818203..818292 (+) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  PY722_RS03965 (PY722_03965) ysdE 818555..818629 (-) 75 WP_211180519.1 protein YsdE -
  PY722_RS03970 (PY722_03970) emrD 818711..819895 (+) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=724539 PY722_RS03940 WP_000633668.1 814787..815377(-) (letA) [Escherichia coli strain CE0021a]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=724539 PY722_RS03940 WP_000633668.1 814787..815377(-) (letA) [Escherichia coli strain CE0021a]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378