Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PY717_RS20860 Genome accession   NZ_CP118997
Coordinates   4324483..4325073 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain CE0032f     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4319483..4330073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY717_RS20830 (PY717_20830) emrD 4319965..4321149 (-) 1185 WP_000828746.1 multidrug efflux MFS transporter EmrD -
  PY717_RS20835 (PY717_20835) ysdE 4321231..4321305 (+) 75 WP_211180519.1 protein YsdE -
  PY717_RS20840 (PY717_20840) tisB 4321568..4321657 (-) 90 WP_000060506.1 type I toxin-antitoxin system toxin TisB -
  PY717_RS20845 (PY717_20845) ivbL 4322222..4322320 (+) 99 WP_001315912.1 ilvB operon leader peptide IvbL -
  PY717_RS20850 (PY717_20850) ilvB 4322426..4324114 (+) 1689 WP_000168480.1 acetolactate synthase large subunit -
  PY717_RS20855 (PY717_20855) ilvN 4324118..4324408 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  PY717_RS20860 (PY717_20860) letA 4324483..4325073 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  PY717_RS20865 (PY717_20865) uhpB 4325073..4326575 (+) 1503 WP_001295243.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  PY717_RS20870 (PY717_20870) uhpC 4326585..4327904 (+) 1320 WP_000936566.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  PY717_RS20875 (PY717_20875) uhpT 4328042..4329433 (+) 1392 WP_097444353.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=724339 PY717_RS20860 WP_000633668.1 4324483..4325073(+) (letA) [Escherichia coli strain CE0032f]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=724339 PY717_RS20860 WP_000633668.1 4324483..4325073(+) (letA) [Escherichia coli strain CE0032f]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAACTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATAATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCACGCGGCTTTCTCTCCAAACGCTGTAGCCCTGACGA
ACTGATTGCGGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GTCAGGACCCGCTAACCAAACGCGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCTGCC
GAACTGGGCTTGTCGCCGAAAACGGTGCACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTAGA
GCTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378