Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PYW37_RS12405 Genome accession   NZ_CP118969
Coordinates   2434826..2435419 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis strain DSM 20481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2429826..2440419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS12375 - 2430033..2430197 (-) 165 WP_003131988.1 hypothetical protein -
  PYW37_RS12380 - 2430374..2430919 (-) 546 WP_023190206.1 AAA family ATPase -
  PYW37_RS12385 - 2430916..2432100 (-) 1185 WP_014570851.1 ABC transporter permease -
  PYW37_RS12390 - 2432167..2432457 (-) 291 WP_023190207.1 hypothetical protein -
  PYW37_RS12395 - 2432677..2433561 (-) 885 WP_023190208.1 XRE/MutR family transcriptional regulator -
  PYW37_RS12400 ruvB 2433698..2434699 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PYW37_RS12405 ruvA 2434826..2435419 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  PYW37_RS12410 hexB 2435532..2437502 (-) 1971 WP_044009590.1 DNA mismatch repair endonuclease MutL Machinery gene
  PYW37_RS12415 - 2437631..2438326 (-) 696 WP_025017068.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=724271 PYW37_RS12405 WP_003131995.1 2434826..2435419(-) (ruvA) [Lactococcus lactis strain DSM 20481]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=724271 PYW37_RS12405 WP_003131995.1 2434826..2435419(-) (ruvA) [Lactococcus lactis strain DSM 20481]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462