Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   K5602_RS08535 Genome accession   NZ_AP024315
Coordinates   1798301..1799290 (-) Length   329 a.a.
NCBI ID   WP_000219064.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BDH17     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793301..1804290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5602_RS08520 (BDH17TP_16360) acsA 1794502..1796208 (-) 1707 WP_000862084.1 acetate--CoA ligase -
  K5602_RS08525 (BDH17TP_16370) - 1796377..1797009 (+) 633 WP_001015998.1 GNAT family N-acetyltransferase -
  K5602_RS08530 (BDH17TP_16380) - 1797034..1798203 (+) 1170 WP_001183987.1 acetoin utilization protein AcuC -
  K5602_RS08535 (BDH17TP_16390) ccpA 1798301..1799290 (-) 990 WP_000219064.1 catabolite control protein A Regulator
  K5602_RS08540 - 1799363..1799476 (-) 114 WP_001791226.1 hypothetical protein -
  K5602_RS08545 (BDH17TP_16400) - 1799830..1800921 (-) 1092 WP_000066379.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  K5602_RS08550 - 1801376..1801459 (-) 84 WP_016186897.1 hypothetical protein -
  K5602_RS08555 (BDH17TP_16410) - 1801615..1802967 (-) 1353 WP_000193953.1 hypothetical protein -
  K5602_RS08560 (BDH17TP_16420) - 1803041..1803532 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36002.20 Da        Isoelectric Point: 5.7655

>NTDB_id=72362 K5602_RS08535 WP_000219064.1 1798301..1799290(-) (ccpA) [Staphylococcus aureus strain BDH17]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=72362 K5602_RS08535 WP_000219064.1 1798301..1799290(-) (ccpA) [Staphylococcus aureus strain BDH17]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTATCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAAGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAGGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAGCA
TTCTAAAAAAGCACAAGAAGATGTATTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGTCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAGCCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462

Multiple sequence alignment