Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K5602_RS08040 Genome accession   NZ_AP024315
Coordinates   1692673..1693275 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain BDH17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687673..1698275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5602_RS08020 (BDH17TP_15470) yajC 1689169..1689429 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  K5602_RS08025 (BDH17TP_15480) tgt 1689448..1690587 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  K5602_RS08030 (BDH17TP_15490) queA 1690610..1691635 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  K5602_RS08035 (BDH17TP_15500) ruvB 1691637..1692641 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K5602_RS08040 (BDH17TP_15510) ruvA 1692673..1693275 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  K5602_RS08045 (BDH17TP_15520) - 1693289..1693744 (-) 456 WP_000368902.1 ACT domain-containing protein -
  K5602_RS08050 (BDH17TP_15530) obgE 1693757..1695049 (-) 1293 WP_000496090.1 GTPase ObgE -
  K5602_RS08055 (BDH17TP_15540) rpmA 1695536..1695820 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  K5602_RS08060 (BDH17TP_15550) - 1695832..1696152 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  K5602_RS08065 (BDH17TP_15560) rplU 1696158..1696466 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  K5602_RS08070 (BDH17TP_15570) mreD 1696953..1697483 (-) 531 WP_001259929.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=72357 K5602_RS08040 WP_000271547.1 1692673..1693275(-) (ruvA) [Staphylococcus aureus strain BDH17]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=72357 K5602_RS08040 WP_000271547.1 1692673..1693275(-) (ruvA) [Staphylococcus aureus strain BDH17]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425