Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   PWP91_RS09720 Genome accession   NZ_CP118738
Coordinates   1956687..1957685 (-) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain P-1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951687..1962685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWP91_RS09700 (PWP91_09700) trxA 1952077..1952391 (-) 315 WP_003129442.1 thioredoxin -
  PWP91_RS09705 (PWP91_09705) mutS/mutS2 1952488..1954818 (-) 2331 WP_274998419.1 endonuclease MutS2 Machinery gene
  PWP91_RS09710 (PWP91_09710) - 1954863..1955423 (-) 561 WP_003129445.1 CvpA family protein -
  PWP91_RS09715 (PWP91_09715) - 1955583..1956548 (-) 966 WP_195229167.1 NAD(P)/FAD-dependent oxidoreductase -
  PWP91_RS09720 (PWP91_09720) ccpA 1956687..1957685 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  PWP91_RS09725 (PWP91_09725) - 1957900..1958988 (+) 1089 WP_274998420.1 M24 family metallopeptidase -
  PWP91_RS09730 (PWP91_09730) - 1959342..1961351 (-) 2010 WP_274998421.1 cell division site-positioning protein MapZ family protein -
  PWP91_RS09735 (PWP91_09735) - 1961499..1962653 (-) 1155 WP_058203846.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=723563 PWP91_RS09720 WP_003129447.1 1956687..1957685(-) (ccpA) [Lactococcus lactis strain P-1]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=723563 PWP91_RS09720 WP_003129447.1 1956687..1957685(-) (ccpA) [Lactococcus lactis strain P-1]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACCTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGTGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGGAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569