Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NX050_RS01980 Genome accession   NZ_CP103456
Coordinates   388095..388214 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain PN176 (HK176)     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 383095..393214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX050_RS01960 (NX050_01960) pbpG 383465..385540 (-) 2076 WP_014481227.1 transglycosylase domain-containing protein -
  NX050_RS01965 (NX050_01965) speE 385742..386572 (+) 831 WP_003227543.1 spermidine synthase -
  NX050_RS01970 (NX050_01970) speB 386633..387505 (+) 873 WP_003227545.1 agmatinase -
  NX050_RS01975 (NX050_01975) - 387570..387997 (-) 428 Protein_393 YbaK/EbsC family protein -
  NX050_RS01980 (NX050_01980) phrF 388095..388214 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NX050_RS01985 (NX050_01985) rapF 388198..389343 (-) 1146 WP_014481226.1 response regulator aspartate phosphatase RapF Regulator
  NX050_RS22475 - 389346..389576 (+) 231 Protein_396 hypothetical protein -
  NX050_RS01990 (NX050_01990) ywhK 389573..390928 (+) 1356 WP_014481224.1 YncE family protein -
  NX050_RS01995 (NX050_01995) ywhL 390967..392343 (+) 1377 WP_014481223.1 YncE family protein -
  NX050_RS02000 (NX050_02000) albG 392349..393050 (-) 702 WP_014481222.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=722847 NX050_RS01980 WP_009968329.1 388095..388214(-) (phrF) [Bacillus subtilis strain PN176 (HK176)]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=722847 NX050_RS01980 WP_009968329.1 388095..388214(-) (phrF) [Bacillus subtilis strain PN176 (HK176)]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487