Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NVV71_RS04215 | Genome accession | NZ_CP103399 |
| Coordinates | 752634..753113 (+) | Length | 159 a.a. |
| NCBI ID | WP_112120314.1 | Uniprot ID | - |
| Organism | Listeria innocua strain F6215 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 736689..788371 | 752634..753113 | within | 0 |
Gene organization within MGE regions
Location: 736689..788371
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NVV71_RS04060 (NVV71_04060) | - | 736689..737036 (+) | 348 | WP_003749261.1 | helix-turn-helix domain-containing protein | - |
| NVV71_RS04065 (NVV71_04065) | - | 737084..737551 (-) | 468 | WP_185547965.1 | competence protein ComK | - |
| NVV71_RS04070 (NVV71_04070) | - | 737542..738900 (-) | 1359 | WP_070030387.1 | recombinase family protein | - |
| NVV71_RS04075 (NVV71_04075) | - | 738964..739704 (-) | 741 | WP_003727737.1 | hypothetical protein | - |
| NVV71_RS04080 (NVV71_04080) | - | 739726..740448 (-) | 723 | WP_003727738.1 | hypothetical protein | - |
| NVV71_RS04085 (NVV71_04085) | - | 740508..741215 (-) | 708 | WP_187989104.1 | hypothetical protein | - |
| NVV71_RS04090 (NVV71_04090) | - | 741277..741882 (-) | 606 | WP_020830685.1 | hypothetical protein | - |
| NVV71_RS14940 | - | 741897..742115 (-) | 219 | WP_003725101.1 | zinc-ribbon domain-containing protein | - |
| NVV71_RS04095 (NVV71_04095) | - | 742138..742629 (-) | 492 | WP_003725100.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NVV71_RS04100 (NVV71_04100) | - | 742660..742965 (-) | 306 | WP_039381694.1 | helix-turn-helix domain-containing protein | - |
| NVV71_RS04105 (NVV71_04105) | - | 743141..743344 (+) | 204 | WP_026747215.1 | helix-turn-helix transcriptional regulator | - |
| NVV71_RS04110 (NVV71_04110) | - | 743365..743559 (+) | 195 | WP_003733687.1 | hypothetical protein | - |
| NVV71_RS04115 (NVV71_04115) | - | 743571..743837 (+) | 267 | WP_010991179.1 | hypothetical protein | - |
| NVV71_RS04120 (NVV71_04120) | - | 743837..743998 (+) | 162 | WP_010991178.1 | hypothetical protein | - |
| NVV71_RS04125 (NVV71_04125) | - | 743991..744233 (-) | 243 | WP_023552476.1 | hypothetical protein | - |
| NVV71_RS04130 (NVV71_04130) | - | 744297..745067 (+) | 771 | WP_010991177.1 | phage repressor protein/antirepressor Ant | - |
| NVV71_RS04135 (NVV71_04135) | - | 745190..745723 (+) | 534 | WP_010991176.1 | hypothetical protein | - |
| NVV71_RS04140 (NVV71_04140) | - | 745720..745935 (+) | 216 | WP_003727752.1 | hypothetical protein | - |
| NVV71_RS04145 (NVV71_04145) | - | 746043..746231 (+) | 189 | WP_045607603.1 | gp45 family putative tail fiber system protein | - |
| NVV71_RS04150 (NVV71_04150) | - | 746313..746441 (+) | 129 | WP_009930468.1 | hypothetical protein | - |
| NVV71_RS04155 (NVV71_04155) | - | 746537..746731 (+) | 195 | WP_003734953.1 | hypothetical protein | - |
| NVV71_RS04160 (NVV71_04160) | - | 746728..747204 (+) | 477 | WP_187989103.1 | siphovirus Gp157 family protein | - |
| NVV71_RS04165 (NVV71_04165) | - | 747210..747869 (+) | 660 | WP_187989102.1 | ERF family protein | - |
| NVV71_RS04170 (NVV71_04170) | - | 747886..748863 (+) | 978 | WP_187989101.1 | phage replisome organizer N-terminal domain-containing protein | - |
| NVV71_RS04175 (NVV71_04175) | - | 748860..749027 (+) | 168 | WP_015987078.1 | hypothetical protein | - |
| NVV71_RS14945 | - | 749033..749317 (+) | 285 | WP_308219097.1 | hypothetical protein | - |
| NVV71_RS04180 (NVV71_04180) | - | 749314..749757 (+) | 444 | WP_187989100.1 | hypothetical protein | - |
| NVV71_RS04185 (NVV71_04185) | - | 749774..750151 (+) | 378 | WP_259002846.1 | hypothetical protein | - |
| NVV71_RS04190 (NVV71_04190) | - | 750151..751131 (+) | 981 | WP_187989098.1 | DNA cytosine methyltransferase | - |
| NVV71_RS04195 (NVV71_04195) | - | 751128..751499 (+) | 372 | WP_187989097.1 | hypothetical protein | - |
| NVV71_RS04200 (NVV71_04200) | - | 751496..751906 (+) | 411 | WP_187989096.1 | YopX family protein | - |
| NVV71_RS04205 (NVV71_04205) | - | 751994..752221 (+) | 228 | WP_020830813.1 | ASCH/PUA domain-containing protein | - |
| NVV71_RS04210 (NVV71_04210) | - | 752233..752634 (+) | 402 | WP_071661751.1 | hypothetical protein | - |
| NVV71_RS04215 (NVV71_04215) | ssbA | 752634..753113 (+) | 480 | WP_112120314.1 | single-stranded DNA-binding protein | Machinery gene |
| NVV71_RS04220 (NVV71_04220) | - | 753132..753314 (+) | 183 | WP_187989095.1 | hypothetical protein | - |
| NVV71_RS04225 (NVV71_04225) | - | 753259..753663 (+) | 405 | WP_187989094.1 | DUF1064 domain-containing protein | - |
| NVV71_RS04230 (NVV71_04230) | - | 753667..754059 (+) | 393 | WP_187989093.1 | DUF2481 family protein | - |
| NVV71_RS04235 (NVV71_04235) | - | 754078..754233 (+) | 156 | WP_003722548.1 | hypothetical protein | - |
| NVV71_RS04240 (NVV71_04240) | - | 754321..754893 (+) | 573 | WP_070209727.1 | sigma-70 family RNA polymerase sigma factor | - |
| NVV71_RS04245 (NVV71_04245) | - | 755427..755729 (+) | 303 | WP_120136319.1 | hypothetical protein | - |
| NVV71_RS04250 (NVV71_04250) | - | 755777..756004 (+) | 228 | WP_003740921.1 | hypothetical protein | - |
| NVV71_RS04255 (NVV71_04255) | terS | 756044..756784 (+) | 741 | WP_003740918.1 | phage terminase small subunit | - |
| NVV71_RS04260 (NVV71_04260) | - | 756750..758096 (+) | 1347 | WP_070277870.1 | PBSX family phage terminase large subunit | - |
| NVV71_RS04265 (NVV71_04265) | - | 758111..759670 (+) | 1560 | WP_187989092.1 | hypothetical protein | - |
| NVV71_RS04270 (NVV71_04270) | - | 759675..760718 (+) | 1044 | WP_003725070.1 | phage minor capsid protein | - |
| NVV71_RS04275 (NVV71_04275) | - | 760813..761367 (+) | 555 | WP_003740894.1 | hypothetical protein | - |
| NVV71_RS04280 (NVV71_04280) | - | 761390..762262 (+) | 873 | WP_003740892.1 | hypothetical protein | - |
| NVV71_RS04285 (NVV71_04285) | - | 762276..762431 (+) | 156 | WP_010991157.1 | hypothetical protein | - |
| NVV71_RS04290 (NVV71_04290) | - | 762432..762785 (+) | 354 | WP_003740890.1 | hypothetical protein | - |
| NVV71_RS04295 (NVV71_04295) | - | 762785..763150 (+) | 366 | WP_010991156.1 | hypothetical protein | - |
| NVV71_RS04300 (NVV71_04300) | - | 763140..763457 (+) | 318 | WP_096811313.1 | HK97 gp10 family phage protein | - |
| NVV71_RS04305 (NVV71_04305) | - | 763454..763825 (+) | 372 | WP_120021247.1 | hypothetical protein | - |
| NVV71_RS04310 (NVV71_04310) | - | 763830..764516 (+) | 687 | WP_187989091.1 | phage tail tube protein | - |
| NVV71_RS04315 (NVV71_04315) | - | 764566..764997 (+) | 432 | WP_003753491.1 | hypothetical protein | - |
| NVV71_RS04320 (NVV71_04320) | - | 765030..765305 (+) | 276 | WP_031644303.1 | Gp15 family bacteriophage protein | - |
| NVV71_RS14960 | - | 765310..770109 (+) | 4800 | Protein_770 | phage tail tape measure protein | - |
| NVV71_RS04335 (NVV71_04335) | - | 770113..770937 (+) | 825 | WP_003725059.1 | phage tail family protein | - |
| NVV71_RS04340 (NVV71_04340) | - | 770950..771963 (+) | 1014 | WP_003740854.1 | phage tail protein | - |
| NVV71_RS04345 (NVV71_04345) | - | 771960..772988 (+) | 1029 | WP_010991151.1 | hypothetical protein | - |
| NVV71_RS04350 (NVV71_04350) | - | 772985..774052 (+) | 1068 | WP_021496264.1 | BppU family phage baseplate upper protein | - |
| NVV71_RS04355 (NVV71_04355) | - | 774049..774390 (+) | 342 | WP_003725055.1 | hypothetical protein | - |
| NVV71_RS04360 (NVV71_04360) | - | 774391..774537 (+) | 147 | WP_012581446.1 | XkdX family protein | - |
| NVV71_RS04365 (NVV71_04365) | - | 774578..774883 (+) | 306 | WP_003733957.1 | hypothetical protein | - |
| NVV71_RS04370 (NVV71_04370) | - | 774883..775164 (+) | 282 | WP_020830702.1 | phage holin | - |
| NVV71_RS04375 (NVV71_04375) | - | 775164..776033 (+) | 870 | WP_187989090.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| NVV71_RS04380 (NVV71_04380) | - | 776396..777292 (+) | 897 | WP_010991148.1 | Abi family protein | - |
| NVV71_RS04385 (NVV71_04385) | - | 777367..777573 (-) | 207 | WP_031645791.1 | hypothetical protein | - |
| NVV71_RS04390 (NVV71_04390) | - | 778133..778336 (-) | 204 | Protein_782 | competence protein ComK | - |
| NVV71_RS04395 (NVV71_04395) | - | 778466..778822 (+) | 357 | WP_077904838.1 | IDEAL domain-containing protein | - |
| NVV71_RS04400 (NVV71_04400) | addB | 778972..782445 (+) | 3474 | WP_070753848.1 | helicase-exonuclease AddAB subunit AddB | - |
| NVV71_RS04405 (NVV71_04405) | addA | 782447..786154 (+) | 3708 | WP_070753847.1 | helicase-exonuclease AddAB subunit AddA | - |
| NVV71_RS04410 (NVV71_04410) | - | 786155..787003 (+) | 849 | WP_070753845.1 | fumarylacetoacetate hydrolase family protein | - |
| NVV71_RS04415 (NVV71_04415) | - | 787023..787385 (+) | 363 | WP_003769902.1 | YisL family protein | - |
| NVV71_RS04420 (NVV71_04420) | - | 787469..788371 (+) | 903 | WP_010991142.1 | YitT family protein | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17766.60 Da Isoelectric Point: 5.2955
>NTDB_id=722480 NVV71_RS04215 WP_112120314.1 752634..753113(+) (ssbA) [Listeria innocua strain F6215]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPRNHAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFANEGKPIDINPDDLPF
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQNGEREADFIQCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPRNHAEGATSNNYQNEANYSNNNKTSSYRADTSQKSDSFANEGKPIDINPDDLPF
Nucleotide
Download Length: 480 bp
>NTDB_id=722480 NVV71_RS04215 WP_112120314.1 752634..753113(+) (ssbA) [Listeria innocua strain F6215]
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAACCGCACTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTAGCTAATTTCTTAAAAAAAGGAAGCTTGGCAGGCGTCGATGGACGCATACAGACTCGA
AATTACGAAGATAACGACGGTAAACGCGTTTTTGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAGCCTAGAAA
CCACGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATCGAG
CGGATACGAGTCAGAAGAGCGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAATCCGGATGATTTACCATTTTGA
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAGGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCCGTTGC
GACTTTTACATTAGCTGTAAACCGCACTTTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTAGCTAATTTCTTAAAAAAAGGAAGCTTGGCAGGCGTCGATGGACGCATACAGACTCGA
AATTACGAAGATAACGACGGTAAACGCGTTTTTGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAGCCTAGAAA
CCACGCAGAAGGCGCTACATCGAATAATTATCAAAACGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATCGAG
CGGATACGAGTCAGAAGAGCGATTCATTTGCGAATGAAGGTAAGCCGATTGATATTAATCCGGATGATTTACCATTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.698 |
100 |
0.711 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.882 |
100 |
0.597 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.821 |
70.44 |
0.421 |