Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PVE41_RS09775 Genome accession   NZ_CP118438
Coordinates   2022475..2024556 (-) Length   693 a.a.
NCBI ID   WP_045596127.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2017475..2029556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS09755 (PVE41_09755) greB 2017946..2018428 (+) 483 WP_011078926.1 transcription elongation factor GreB -
  PVE41_RS09760 (PVE41_09760) ompR 2018629..2019348 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  PVE41_RS09765 (PVE41_09765) envZ 2019441..2020739 (+) 1299 WP_011149224.1 two-component system sensor histidine kinase EnvZ -
  PVE41_RS09770 (PVE41_09770) - 2020816..2022219 (-) 1404 WP_011078923.1 uracil-xanthine permease family protein -
  PVE41_RS09775 (PVE41_09775) recG 2022475..2024556 (-) 2082 WP_045596127.1 ATP-dependent DNA helicase RecG Machinery gene
  PVE41_RS09780 (PVE41_09780) trmH 2024668..2025354 (-) 687 WP_011078921.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  PVE41_RS09785 (PVE41_09785) spoT 2025442..2027562 (-) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  PVE41_RS09790 (PVE41_09790) rpoZ 2027597..2027869 (-) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  PVE41_RS09795 (PVE41_09795) gmk 2027997..2028620 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76799.90 Da        Isoelectric Point: 7.5952

>NTDB_id=722402 PVE41_RS09775 WP_045596127.1 2022475..2024556(-) (recG) [Vibrio vulnificus strain 1908-10]
MSAQLLSAIPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=722402 PVE41_RS09775 WP_045596127.1 2022475..2024556(-) (recG) [Vibrio vulnificus strain 1908-10]
ATGTCTGCCCAACTGTTATCTGCTATCCCCCTCACATCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAACTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGCCATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTGAAGCTCAGCGACGGGAATGGCACCATCACGTTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCTGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTACGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGCTGCCACTTCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGCTCGGGTAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAATTGCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCAGGCAAGCTCAAAGGTAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCTCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTGCATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCTTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCGG
GACGAACCCCTATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGACAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTGATGCAAGCGTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGGGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCGGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTATTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGTGGGCCAGGTGAGTTGCTCGGCACCAAACAA
ACCGGCCTAGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTTATCCCCGAAGTTCAGCGCGCTGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.714

96.537

0.374