Detailed information NTG0722369

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NRS07_RS05415
• Genome accession: NZ_CP103371
• Coordinates: 1197352..1198224 (-)
• Length: 290 a.a.
• NCBI ID: WP_259211652.1
• Uniprot ID: -
• Organism: Massilia sp. H6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1192352..1203224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NRS07_RS05385 (NRS07_05385)	argJ	1193109..1194347 (+)	1239	WP_259211642.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
NRS07_RS05390 (NRS07_05390)	-	1194352..1195242 (+)	891	WP_259211644.1	ATP-binding protein	-
NRS07_RS05395 (NRS07_05395)	-	1195235..1195654 (+)	420	WP_259211646.1	NUDIX domain-containing protein	-
NRS07_RS05400 (NRS07_05400)	yacG	1195675..1195857 (-)	183	WP_259211647.1	DNA gyrase inhibitor YacG	-
NRS07_RS05405 (NRS07_05405)	zapD	1195883..1196638 (-)	756	WP_259211648.1	cell division protein ZapD	-
NRS07_RS05410 (NRS07_05410)	coaE	1196733..1197350 (-)	618	WP_259211650.1	dephospho-CoA kinase	-
NRS07_RS05415 (NRS07_05415)	pilD	1197352..1198224 (-)	873	WP_259211652.1	A24 family peptidase	Machinery gene
NRS07_RS05420 (NRS07_05420)	-	1198269..1199366 (-)	1098	WP_259211654.1	GlxA family transcriptional regulator	-
NRS07_RS05425 (NRS07_05425)	-	1199478..1200275 (+)	798	WP_259211655.1	MBL fold metallo-hydrolase	-
NRS07_RS05430 (NRS07_05430)	-	1200426..1201817 (+)	1392	WP_259211656.1	S8 family serine peptidase	-
NRS07_RS05435 (NRS07_05435)	pilC	1201826..1203061 (-)	1236	WP_259211658.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31042.90 Da
• Isoelectric Point: 8.1287

>NTDB_id=722369 NRS07_RS05415 WP_259211652.1 1197352..1198224(-) (pilD) [Massilia sp. H6]
MPPESILFAPPATLAATLVAALFGLLVGSFLNVVIHRIPRMMQRESDNYVAQESGKPAPHQERYNLMVPRSSCPHCSHQI
TALENIPVISWLALRGKCSNCKAPISARYPAVELLTGTLAGVLVWTFGSGMAGLATLLFLFLLVAMTFIDVDTQLLPDDL
TYPLLWAGLLVNLHGTFVPLQDAVIGAAAGYLVLWAVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWAMLPTIILLSSVV
GAVVGISLIVFAKRGRDKPIPFGPYLAAAGLIALLYGSAISAWLQGVLVA

Nucleotide

• Length: 873 bp

>NTDB_id=722369 NRS07_RS05415 WP_259211652.1 1197352..1198224(-) (pilD) [Massilia sp. H6]
ATGCCCCCGGAATCCATCCTGTTCGCGCCGCCTGCCACGCTGGCGGCCACCCTCGTGGCAGCCCTGTTCGGGCTGCTCGT
CGGCAGCTTCCTGAACGTGGTCATCCACCGCATCCCCCGGATGATGCAGCGCGAATCCGACAATTACGTGGCCCAGGAAA
GCGGCAAGCCGGCGCCCCACCAGGAGCGCTACAACCTGATGGTGCCGCGCTCGAGCTGCCCGCATTGCAGCCACCAGATC
ACGGCGCTGGAAAACATCCCGGTCATCAGCTGGCTGGCGCTGCGCGGCAAGTGCAGCAACTGCAAGGCGCCGATCTCGGC
GCGCTATCCGGCCGTCGAACTGCTTACCGGAACCCTGGCAGGCGTGCTGGTATGGACCTTCGGCAGCGGCATGGCGGGAC
TGGCCACATTGCTGTTCCTGTTCCTGCTGGTGGCCATGACCTTCATCGACGTCGACACCCAGCTGCTGCCGGACGACCTG
ACCTATCCGCTGCTGTGGGCCGGCCTGCTGGTGAACCTGCATGGCACCTTTGTGCCGCTGCAGGACGCGGTGATCGGCGC
CGCTGCCGGCTACCTGGTGCTGTGGGCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGGCCATGCTGCCGACCATTATCCTGCTCTCTTCGGTGGTC
GGCGCAGTAGTAGGCATCAGCCTGATCGTGTTCGCCAAGCGCGGGCGCGACAAGCCGATTCCTTTCGGCCCCTACCTGGC
AGCCGCCGGCCTGATCGCCCTGCTCTACGGCAGCGCCATCAGCGCGTGGCTGCAAGGCGTGCTGGTGGCTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.778	93.103	0.538
pilD	Vibrio campbellii strain DS40M4	57.678	92.069	0.531
pilD	Acinetobacter baumannii D1279779	50.373	92.414	0.466
pilD	Acinetobacter nosocomialis M2	50	92.414	0.462
pilD	Neisseria gonorrhoeae MS11	48.315	92.069	0.445