Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   PVE41_RS04075 Genome accession   NZ_CP118438
Coordinates   808969..811122 (-) Length   717 a.a.
NCBI ID   WP_243301308.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 1908-10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 803969..816122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE41_RS04050 (PVE41_04050) - 804303..805091 (-) 789 WP_011079975.1 GGDEF domain-containing protein -
  PVE41_RS04055 (PVE41_04055) kdsB 805263..806018 (-) 756 WP_206639473.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PVE41_RS04060 (PVE41_04060) - 806018..806197 (-) 180 WP_011079973.1 Trm112 family protein -
  PVE41_RS04065 (PVE41_04065) lpxK 806178..807185 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  PVE41_RS04070 (PVE41_04070) msbA 807185..808936 (-) 1752 WP_043877274.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  PVE41_RS04075 (PVE41_04075) comEC 808969..811122 (-) 2154 WP_243301308.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PVE41_RS04080 (PVE41_04080) - 811227..811736 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  PVE41_RS04085 (PVE41_04085) lolE 811932..813176 (-) 1245 WP_011150837.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  PVE41_RS04090 (PVE41_04090) lolD 813188..813871 (-) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PVE41_RS04095 (PVE41_04095) lolC 813864..815069 (-) 1206 WP_224638691.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  PVE41_RS04100 (PVE41_04100) - 815333..815902 (+) 570 WP_045596678.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80560.05 Da        Isoelectric Point: 8.8203

>NTDB_id=722355 PVE41_RS04075 WP_243301308.1 808969..811122(-) (comEC) [Vibrio vulnificus strain 1908-10]
MLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSH
LMWTLRPKVRLISSIPLGQGDQIVVHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKA
QQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSTSLWLSFLAVSCVFLVVDLRESS
SSWIGKMKSVFWIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASMLWQLADLS
LWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHVIRWQFSAVLIILLSTSSLLIHPLSRTRIDVLDVGHGLAVLIE
KDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHD
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIRDPEQLNSDVVLVPHHGSQTSSIEPF
VNAVQAGVAIASLAKGNQWGMPQPKVVETYRRHRTQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=722355 PVE41_RS04075 WP_243301308.1 808969..811122(-) (comEC) [Vibrio vulnificus strain 1908-10]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGGTGACCATCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCATGGCTATGAAGGTGTTGTTAGCATCACGGCAATAAATAATAGTCAT
TTAATGTGGACCCTGCGACCCAAAGTGCGTTTGATCTCATCCATTCCTCTTGGTCAGGGGGATCAAATCGTAGTGCATGT
GACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGCATCGTTG
GACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCT
CAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGA
GCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATTGGTATGGCTTTTGGTA
TCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCATTGGCTATTGGACTGAGTCTC
AGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCATTGTT
CTCGTTTACGTCGGGGCAAGTCGGTCGCTGGACAGTCTTGCTATTGGCTCTGGCCTTCTGTCTTGCGATGTCGCCATTTT
CTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCGTGAGTCGTCT
TCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGGATCCAAGGTATGCTGCTGCTTTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCATGGTTTAGTTTGGTGGTGGTGCCTG
TTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTGTGGCAGTTAGCGGATTTAAGT
TTATGGCCATTAACTTACGCTATGCCTTACGCCCATTTAGGTTGGTGGGGGCTGTCTTCTTTTCAGGTGGTGTTGGTCGC
GTTGTGCGCGCTCGCTGTGATGCTGAGACATGTTATTCGCTGGCAATTCTCTGCCGTTTTGATCATTTTGCTCAGCACTT
CTTCACTGTTGATTCATCCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGCAGTATTGCGCAGCAAGTGATTGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCATGCAGGCGGCTTGCCCT
ATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTGTGTTAAAGGTCATGAC
TTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCCCACTCCTGTGT
GATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTGGCTGAGTGGATTCTGA
TTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTT
GTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGAAAGTGGT
CGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTGTATGTGGAACAGAGAA
ACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-650)

Competence protein (Competence)

(176-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

44.875

100

0.452
  comEC Vibrio parahaemolyticus RIMD 2210633

45.957

98.326

0.452
  comEC Vibrio cholerae strain A1552

42.521

100

0.428