Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   PVK54_RS08670 Genome accession   NZ_CP118312
Coordinates   1659774..1659953 (-) Length   59 a.a.
NCBI ID   WP_038432505.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20181688     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1654774..1664953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK54_RS08650 (PVK54_08605) - 1655621..1656280 (+) 660 WP_014635687.1 Crp/Fnr family transcriptional regulator -
  PVK54_RS08655 (PVK54_08610) - 1656302..1658584 (+) 2283 WP_002988216.1 Xaa-Pro dipeptidyl-peptidase -
  PVK54_RS08660 (PVK54_08615) - 1658664..1658885 (-) 222 WP_002988211.1 helix-turn-helix domain-containing protein -
  PVK54_RS08665 (PVK54_08620) - 1659055..1659429 (+) 375 WP_002988207.1 helix-turn-helix domain-containing protein -
  PVK54_RS08670 (PVK54_08625) prx 1659774..1659953 (-) 180 WP_038432505.1 hypothetical protein Regulator
  PVK54_RS08675 (PVK54_08630) - 1660156..1660395 (+) 240 WP_003055856.1 hypothetical protein -
  PVK54_RS08680 (PVK54_08635) - 1660434..1660733 (+) 300 WP_247522168.1 hypothetical protein -
  PVK54_RS08685 (PVK54_08640) - 1660910..1661266 (+) 357 WP_003055891.1 hypothetical protein -
  PVK54_RS08690 (PVK54_08645) acrIIA3 1661399..1661773 (+) 375 WP_023611744.1 anti-CRISPR protein AcrIIA3 -
  PVK54_RS08695 (PVK54_08650) - 1661773..1662375 (+) 603 WP_023611748.1 AP endonuclease -
  PVK54_RS08700 (PVK54_08655) - 1662377..1662592 (+) 216 WP_023611751.1 hypothetical protein -
  PVK54_RS08705 (PVK54_08660) - 1662661..1662900 (+) 240 WP_003055855.1 hypothetical protein -
  PVK54_RS08710 (PVK54_08665) - 1663086..1664288 (-) 1203 WP_023611747.1 glucosaminidase domain-containing protein -
  PVK54_RS08715 (PVK54_08670) - 1664405..1664632 (-) 228 WP_000609113.1 phage holin -
  PVK54_RS08720 (PVK54_08675) - 1664629..1664904 (-) 276 WP_002987582.1 hypothetical protein -

Sequence


Protein


Download         Length: 59 a.a.        Molecular weight: 6792.86 Da        Isoelectric Point: 4.0650

>NTDB_id=722243 PVK54_RS08670 WP_038432505.1 1659774..1659953(-) (prx) [Streptococcus pyogenes strain 20181688]
MLTYDEFKQAIDNGYITADTVMIVRKNGQIFDYVLPGEPVRPWEVMTVEVAGEVLMELR

Nucleotide


Download         Length: 180 bp        

>NTDB_id=722243 PVK54_RS08670 WP_038432505.1 1659774..1659953(-) (prx) [Streptococcus pyogenes strain 20181688]
ATGCTAACATACGACGAATTTAAGCAAGCAATTGACAATGGATATATCACAGCAGACACAGTTATGATCGTGCGTAAAAA
TGGACAGATTTTTGATTATGTTTTGCCCGGTGAGCCTGTGAGACCGTGGGAGGTTATGACAGTTGAAGTAGCGGGAGAAG
TGCTAATGGAATTGAGGTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

75.862

98.305

0.746

  prx Streptococcus pyogenes MGAS315

75.862

98.305

0.746

  prx Streptococcus pyogenes MGAS8232

74.138

98.305

0.729

  prx Streptococcus pyogenes MGAS315

74.138

98.305

0.729

  prx Streptococcus pyogenes MGAS315

90.476

71.186

0.644

  prx Streptococcus pyogenes MGAS315

85.366

69.492

0.593

  prx Streptococcus pyogenes MGAS315

75.61

69.492

0.525