Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NX819_RS16625 Genome accession   NZ_CP103351
Coordinates   3186806..3187450 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM115947     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3181806..3192450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS16590 (NX819_16590) mrpB 3182998..3183429 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NX819_RS16595 (NX819_16595) mrpC 3183429..3183770 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NX819_RS16600 (NX819_16600) mrpD 3183763..3185244 (+) 1482 WP_259266271.1 Na+/H+ antiporter subunit D -
  NX819_RS16605 (NX819_16605) mrpE 3185250..3185726 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NX819_RS16610 (NX819_16610) mrpF 3185726..3186010 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NX819_RS16615 (NX819_16615) mnhG 3185994..3186368 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NX819_RS16620 (NX819_16620) yuxO 3186407..3186787 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NX819_RS16625 (NX819_16625) comA 3186806..3187450 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NX819_RS16630 (NX819_16630) comP 3187531..3189841 (-) 2311 Protein_3212 two-component system sensor histidine kinase ComP -
  NX819_RS16635 (NX819_16635) comX 3189856..3190023 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  NX819_RS16640 (NX819_16640) comQ 3190011..3190910 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  NX819_RS16645 (NX819_16645) degQ 3191095..3191235 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NX819_RS16650 (NX819_16650) - 3191457..3191582 (+) 126 WP_003228793.1 hypothetical protein -
  NX819_RS16655 (NX819_16655) - 3191696..3192064 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=722240 NX819_RS16625 WP_003220716.1 3186806..3187450(-) (comA) [Bacillus subtilis strain SRCM115947]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=722240 NX819_RS16625 WP_003220716.1 3186806..3187450(-) (comA) [Bacillus subtilis strain SRCM115947]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1