Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PVK54_RS08040 Genome accession   NZ_CP118312
Coordinates   1549176..1551191 (-) Length   671 a.a.
NCBI ID   WP_002988554.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 20181688     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544176..1556191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK54_RS08020 (PVK54_07975) - 1544490..1545878 (-) 1389 WP_002988557.1 Cof-type HAD-IIB family hydrolase -
  PVK54_RS08025 (PVK54_07980) - 1545950..1546915 (+) 966 WP_002983258.1 asparaginase -
  PVK54_RS08030 (PVK54_07985) - 1547264..1547968 (-) 705 WP_002988556.1 ABC transporter permease -
  PVK54_RS08035 (PVK54_07990) - 1547981..1548883 (-) 903 WP_002988555.1 ATP-binding cassette domain-containing protein -
  PVK54_RS08040 (PVK54_07995) recG/mmsA 1549176..1551191 (-) 2016 WP_002988554.1 ATP-dependent DNA helicase RecG Machinery gene
  PVK54_RS08045 (PVK54_08000) - 1551566..1553020 (-) 1455 WP_002988553.1 ABC transporter ATP-binding protein -
  PVK54_RS08050 (PVK54_08005) - 1552957..1553637 (-) 681 WP_002983239.1 energy-coupling factor transporter transmembrane component T -
  PVK54_RS08055 (PVK54_08010) - 1553634..1554227 (-) 594 WP_002983234.1 MptD family putative ECF transporter S component -
  PVK54_RS08060 (PVK54_08015) - 1554224..1555894 (-) 1671 WP_002988552.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75219.96 Da        Isoelectric Point: 7.3762

>NTDB_id=722235 PVK54_RS08040 WP_002988554.1 1549176..1551191(-) (recG/mmsA) [Streptococcus pyogenes strain 20181688]
MILTAPMSNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQSTLIKAIKSAFE
IDAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLPILYSKH
AMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKAAVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDARMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VSAAIVSDPNWIYEKQWQLVAQNIRKKEVYD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=722235 PVK54_RS08040 WP_002988554.1 1549176..1551191(-) (recG/mmsA) [Streptococcus pyogenes strain 20181688]
ATGATATTAACAGCTCCTATGTCCAACTTAAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTGCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCTTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTCAAATTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTTTTTGGTAAATGGGATGCCACTAAATCGGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTAGCTCAGGGAATTTCACAGTCTACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCGATGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGAAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCTATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAAGCCGAAAATAAATCTGAAACAAATGGTTTGCCTATTCTTTATAGTAAACAT
GCTATGGAGACAAAGATTTCCTCTTTACCCTTTATTCTAACAAATGCTCAAAAGCGCTCTTTAGATGACATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTGGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTTCCAACGGAAATCCTAGCTGAACAACACTACATTAGT
CTGCAAGAGTTATTTCCAGATCTATCAATTGCTATATTAACTTCGGGTATGAAAGCCGCTGTCAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCAGTGGATATGATTGTAGGAACTCATGCTCTTATCCAAGACTCGGTACAGTACCATAAACTGG
GGCTTGTCATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTGTTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATGACACGCTGGGTGAAACACGAGCAGCTAGGGACTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAATCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCCGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCCAGAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCCACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGTCAGTTACATCAACTTCGT
GGGCGTGTTGGTCGTGGATATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACTGATTCGGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTAGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAATTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCACGCAAA
GTTTCTGCAGCGATTGTTTCTGATCCTAACTGGATATATGAAAAACAGTGGCAATTAGTGGCACAAAATATTAGAAAAAA
AGAAGTTTATGATTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(10-157)

Helicase conserved C-terminal domain (Helicase_C)

(458-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.386

100

0.714
  recG/mmsA Streptococcus pneumoniae R36A

71.386

100

0.714
  recG Bacillus subtilis subsp. subtilis str. 168

49.104

99.851

0.49
  recG Neisseria meningitidis strain C311

38.822

98.659

0.383