Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX819_RS00245 Genome accession   NZ_CP103351
Coordinates   44113..44403 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM115947     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39113..49403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX819_RS00205 (NX819_00205) darA 39136..39465 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  NX819_RS00210 (NX819_00210) yaaR 39478..39918 (+) 441 WP_009966249.1 YaaR family protein -
  NX819_RS00215 (NX819_00215) holB 39930..40919 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  NX819_RS00220 (NX819_00220) ricT 40922..41749 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  NX819_RS00225 (NX819_00225) yabA 41764..42123 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  NX819_RS00230 (NX819_00230) trmNF 42182..42925 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NX819_RS00235 (NX819_00235) yazA 42912..43211 (+) 300 WP_046380716.1 GIY-YIG nuclease family protein -
  NX819_RS00240 (NX819_00240) rsmI 43186..44064 (+) 879 WP_046380717.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NX819_RS00245 (NX819_00245) abrB 44113..44403 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  NX819_RS00250 (NX819_00250) metG 44898..46892 (+) 1995 WP_089172433.1 methionine--tRNA ligase -
  NX819_RS00255 (NX819_00255) dayD 46971..47738 (+) 768 WP_014475570.1 TatD family hydrolase -
  NX819_RS00260 (NX819_00260) yabE 47894..49207 (+) 1314 WP_046380719.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=722180 NX819_RS00245 WP_003226760.1 44113..44403(-) (abrB) [Bacillus subtilis strain SRCM115947]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=722180 NX819_RS00245 WP_003226760.1 44113..44403(-) (abrB) [Bacillus subtilis strain SRCM115947]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1