Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NX810_RS20435 Genome accession   NZ_CP103350
Coordinates   3891521..3891640 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain SRCM117108     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3886521..3896640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS20415 (NX810_20415) albG 3886688..3887389 (+) 702 WP_003227556.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NX810_RS20420 (NX810_20420) ywhL 3887395..3888768 (-) 1374 WP_163259939.1 YncE family protein -
  NX810_RS20425 (NX810_20425) ywhK 3888807..3890162 (-) 1356 WP_046664001.1 YncE family protein -
  NX810_RS22320 - 3890159..3890359 (-) 201 WP_029726081.1 hypothetical protein -
  NX810_RS20430 (NX810_20430) rapF 3890392..3891537 (+) 1146 WP_015714890.1 response regulator aspartate phosphatase RapF Regulator
  NX810_RS20435 (NX810_20435) phrF 3891521..3891640 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  NX810_RS20440 (NX810_20440) - 3891738..3892203 (+) 466 Protein_3975 YbaK/EbsC family protein -
  NX810_RS20445 (NX810_20445) speB 3892235..3893107 (-) 873 WP_003227545.1 agmatinase -
  NX810_RS20450 (NX810_20450) speE 3893168..3893998 (-) 831 WP_003227543.1 spermidine synthase -
  NX810_RS20455 (NX810_20455) pbpG 3894201..3896276 (+) 2076 WP_259013617.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=722174 NX810_RS20435 WP_041334633.1 3891521..3891640(+) (phrF) [Bacillus subtilis strain SRCM117108]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=722174 NX810_RS20435 WP_041334633.1 3891521..3891640(+) (phrF) [Bacillus subtilis strain SRCM117108]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487