Detailed information NTG0722173

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: NX810_RS20430
• Genome accession: NZ_CP103350
• Coordinates: 3890392..3891537 (+)
• Length: 381 a.a.
• NCBI ID: WP_015714890.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain SRCM117108
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3885392..3896537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NX810_RS20410 (NX810_20410)	albF	3885411..3886691 (+)	1281	WP_046664000.1	pitrilysin family protein	-
NX810_RS20415 (NX810_20415)	albG	3886688..3887389 (+)	702	WP_003227556.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
NX810_RS20420 (NX810_20420)	ywhL	3887395..3888768 (-)	1374	WP_163259939.1	YncE family protein	-
NX810_RS20425 (NX810_20425)	ywhK	3888807..3890162 (-)	1356	WP_046664001.1	YncE family protein	-
NX810_RS22320	-	3890159..3890359 (-)	201	WP_029726081.1	hypothetical protein	-
NX810_RS20430 (NX810_20430)	rapF	3890392..3891537 (+)	1146	WP_015714890.1	response regulator aspartate phosphatase RapF	Regulator
NX810_RS20435 (NX810_20435)	phrF	3891521..3891640 (+)	120	WP_041334633.1	phosphatase RapF inhibitor PhrF	Regulator
NX810_RS20440 (NX810_20440)	-	3891738..3892203 (+)	466	Protein_3975	YbaK/EbsC family protein	-
NX810_RS20445 (NX810_20445)	speB	3892235..3893107 (-)	873	WP_003227545.1	agmatinase	-
NX810_RS20450 (NX810_20450)	speE	3893168..3893998 (-)	831	WP_003227543.1	spermidine synthase	-
NX810_RS20455 (NX810_20455)	pbpG	3894201..3896276 (+)	2076	WP_259013617.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45571.01 Da
• Isoelectric Point: 4.9848

>NTDB_id=722173 NX810_RS20430 WP_015714890.1 3890392..3891537(+) (rapF) [Bacillus subtilis strain SRCM117108]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLNLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=722173 NX810_RS20430 WP_015714890.1 3890392..3891537(+) (rapF) [Bacillus subtilis strain SRCM117108]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTAATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.688	100	0.987
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572