Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NX810_RS19335 Genome accession   NZ_CP103350
Coordinates   3676616..3678007 (-) Length   463 a.a.
NCBI ID   WP_014481052.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671616..3683007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS19300 (NX810_19300) flgL 3671788..3672684 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NX810_RS19305 (NX810_19305) flgK 3672695..3674218 (-) 1524 WP_101501516.1 flagellar hook-associated protein FlgK -
  NX810_RS19310 (NX810_19310) flgN 3674237..3674719 (-) 483 WP_172861528.1 flagellar protein FlgN -
  NX810_RS19315 (NX810_19315) flgM 3674735..3675001 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX810_RS19320 (NX810_19320) yvyF 3675082..3675501 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NX810_RS19325 (NX810_19325) comFC 3675574..3676296 (-) 723 WP_049140510.1 comF operon protein ComFC Machinery gene
  NX810_RS19330 (NX810_19330) comFB 3676260..3676556 (-) 297 WP_014478130.1 late competence protein ComFB -
  NX810_RS19335 (NX810_19335) comFA 3676616..3678007 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NX810_RS19340 (NX810_19340) fakBA 3678113..3678958 (-) 846 WP_003244125.1 DegV family protein -
  NX810_RS19345 (NX810_19345) degU 3679056..3679745 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NX810_RS19350 (NX810_19350) degS 3679828..3680985 (-) 1158 WP_259013449.1 two-component sensor histidine kinase DegS Regulator
  NX810_RS19355 (NX810_19355) yvyE 3681202..3681855 (+) 654 WP_003227979.1 YigZ family protein -
  NX810_RS19360 (NX810_19360) tagV 3681855..3682967 (+) 1113 WP_172861529.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52543.49 Da        Isoelectric Point: 9.7976

>NTDB_id=722167 NX810_RS19335 WP_014481052.1 3676616..3678007(-) (comFA) [Bacillus subtilis strain SRCM117108]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=722167 NX810_RS19335 WP_014481052.1 3676616..3678007(-) (comFA) [Bacillus subtilis strain SRCM117108]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGAAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGGGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.056

100

0.981