Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NX810_RS19345 Genome accession   NZ_CP103350
Coordinates   3679056..3679745 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM117108     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3674056..3684745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS19310 (NX810_19310) flgN 3674237..3674719 (-) 483 WP_172861528.1 flagellar protein FlgN -
  NX810_RS19315 (NX810_19315) flgM 3674735..3675001 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NX810_RS19320 (NX810_19320) yvyF 3675082..3675501 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NX810_RS19325 (NX810_19325) comFC 3675574..3676296 (-) 723 WP_049140510.1 comF operon protein ComFC Machinery gene
  NX810_RS19330 (NX810_19330) comFB 3676260..3676556 (-) 297 WP_014478130.1 late competence protein ComFB -
  NX810_RS19335 (NX810_19335) comFA 3676616..3678007 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  NX810_RS19340 (NX810_19340) fakBA 3678113..3678958 (-) 846 WP_003244125.1 DegV family protein -
  NX810_RS19345 (NX810_19345) degU 3679056..3679745 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NX810_RS19350 (NX810_19350) degS 3679828..3680985 (-) 1158 WP_259013449.1 two-component sensor histidine kinase DegS Regulator
  NX810_RS19355 (NX810_19355) yvyE 3681202..3681855 (+) 654 WP_003227979.1 YigZ family protein -
  NX810_RS19360 (NX810_19360) tagV 3681855..3682967 (+) 1113 WP_172861529.1 LCP family protein -
  NX810_RS19365 (NX810_19365) tagO 3683040..3684116 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=722168 NX810_RS19345 WP_003219701.1 3679056..3679745(-) (degU) [Bacillus subtilis strain SRCM117108]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=722168 NX810_RS19345 WP_003219701.1 3679056..3679745(-) (degU) [Bacillus subtilis strain SRCM117108]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1