Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   NX062_RS18855 Genome accession   NZ_CP103328
Coordinates   3554176..3554295 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain KC14-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549176..3559295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS18830 (NX062_18840) albG 3549339..3550040 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NX062_RS18835 (NX062_18845) ywhL 3550046..3551422 (-) 1377 WP_015250987.1 YncE family protein -
  NX062_RS18840 (NX062_18850) ywhK 3551462..3552817 (-) 1356 WP_129110589.1 YncE family protein -
  NX062_RS18845 - 3552814..3553044 (-) 231 Protein_3655 hypothetical protein -
  NX062_RS18850 (NX062_18855) rapF 3553047..3554192 (+) 1146 WP_262091130.1 response regulator aspartate phosphatase RapF Regulator
  NX062_RS18855 (NX062_18860) phrF 3554176..3554295 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NX062_RS18860 (NX062_18865) ywhH 3554393..3554866 (+) 474 Protein_3658 YbaK/EbsC family protein -
  NX062_RS18865 (NX062_18870) speB 3554897..3555769 (-) 873 WP_003227545.1 agmatinase -
  NX062_RS18870 (NX062_18875) speE 3555830..3556660 (-) 831 WP_003227543.1 spermidine synthase -
  NX062_RS18875 (NX062_18880) pbpG 3556863..3558938 (+) 2076 WP_029726084.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=722016 NX062_RS18855 WP_009968329.1 3554176..3554295(+) (phrF) [Bacillus subtilis strain KC14-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=722016 NX062_RS18855 WP_009968329.1 3554176..3554295(+) (phrF) [Bacillus subtilis strain KC14-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487