Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NX062_RS01975 Genome accession   NZ_CP103328
Coordinates   368859..369257 (-) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain KC14-1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 363859..374257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX062_RS01940 (NX062_01940) - 364723..364920 (+) 198 Protein_339 hypothetical protein -
  NX062_RS01945 (NX062_01945) - 364957..365277 (+) 321 Protein_340 RDD family protein -
  NX062_RS01950 (NX062_01950) yckD 365359..365691 (+) 333 WP_015252849.1 YckD family protein -
  NX062_RS01955 (NX062_01955) - 365819..366241 (+) 423 WP_201449129.1 MarR family winged helix-turn-helix transcriptional regulator -
  NX062_RS01960 (NX062_01960) - 366229..366570 (+) 342 WP_032724911.1 DUF3147 family protein -
  NX062_RS01965 (NX062_01965) - 366589..367317 (+) 729 WP_046160039.1 AAA family ATPase -
  NX062_RS01970 (NX062_01970) bglC 367389..368822 (+) 1434 WP_046160040.1 6-phospho-beta-glucosidase -
  NX062_RS01975 (NX062_01975) nin/comJ 368859..369257 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  NX062_RS01980 (NX062_01980) nucA/comI 369284..369733 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NX062_RS01985 (NX062_01985) tlpC 369901..371622 (-) 1722 WP_046160041.1 methyl-accepting chemotaxis protein TlpC -
  NX062_RS01990 (NX062_01990) hxlB 371732..372289 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  NX062_RS01995 (NX062_01995) hxlA 372295..372927 (-) 633 WP_021481819.1 3-hexulose-6-phosphate synthase -
  NX062_RS02000 (NX062_02000) hxlR 373159..373521 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=721948 NX062_RS01975 WP_021481824.1 368859..369257(-) (nin/comJ) [Bacillus subtilis strain KC14-1]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=721948 NX062_RS01975 WP_021481824.1 368859..369257(-) (nin/comJ) [Bacillus subtilis strain KC14-1]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992