Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NXY85_RS18470 Genome accession   NZ_CP103290
Coordinates   3642188..3643138 (+) Length   316 a.a.
NCBI ID   WP_258728611.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637188..3648138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS18445 rapC 3638482..3639630 (+) 1149 WP_004430265.1 tetratricopeptide repeat protein Regulator
  NXY85_RS18450 phrC 3639614..3639733 (+) 120 WP_004430266.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NXY85_RS18455 - 3639867..3639974 (-) 108 WP_072053240.1 YjcZ family sporulation protein -
  NXY85_RS18460 - 3640178..3640261 (-) 84 WP_370499808.1 YjcZ family sporulation protein -
  NXY85_RS18465 - 3640392..3641756 (-) 1365 WP_258728610.1 aspartate kinase -
  NXY85_RS18470 ceuB 3642188..3643138 (+) 951 WP_258728611.1 ABC transporter permease Machinery gene
  NXY85_RS18475 - 3643131..3644078 (+) 948 WP_010789704.1 iron chelate uptake ABC transporter family permease subunit -
  NXY85_RS18480 yclP 3644072..3644830 (+) 759 WP_258728612.1 petrobactin ABC transporter ATP-binding protein YclP -
  NXY85_RS18485 - 3644852..3645805 (+) 954 WP_004430274.1 siderophore ABC transporter substrate-binding protein -
  NXY85_RS18490 - 3646096..3647514 (-) 1419 WP_258728613.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34953.47 Da        Isoelectric Point: 9.8731

>NTDB_id=721702 NXY85_RS18470 WP_258728611.1 3642188..3643138(+) (ceuB) [Bacillus atrophaeus strain NS2]
MKLRYLVVLLILLAFCSIFIGVEDLSPLDLFHMNKEEASTLFASRLPRLISIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLIKMLIAFIFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNISSWLQGDFSLIVKGRYELLFLSIPLVIIAYVFADKFTVAGMGESFSVNLGLKYKRIVNIGLIISSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLLCDILGRIIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=721702 NXY85_RS18470 WP_258728611.1 3642188..3643138(+) (ceuB) [Bacillus atrophaeus strain NS2]
ATGAAGCTACGTTACTTAGTTGTTTTACTTATTTTACTTGCATTCTGTTCTATTTTTATCGGCGTAGAGGATCTGTCGCC
GCTGGATCTTTTTCATATGAATAAAGAAGAGGCTTCAACGCTTTTCGCCAGCCGTTTACCGAGATTAATCAGCATTATTA
TTGCAGGCATGAGCCTGAGCATCTGCGGTTTAATTATGCAGCAGATCAGCCGGAATAAATTCGTTTCGCCGACAACTGCC
GGCACGATGGATTGGGCGAGGCTCGGGATTTTGATTTCATTAATGCTGTTTACCTCTGCCAGTCCGCTGATAAAAATGCT
GATTGCTTTTATATTTGCGCTTGCGGGCAACTTCCTGTTCATGAAAATCCTTGAGAGAATAAAGTTTAATGATACGATCT
TTATTCCTCTCGTGGGCTTAATGCTTGGGAACATTGTCAGCTCGATTGCGACGTTTATCGCGTATAAATATGATTTAATC
CAAAATATTTCTTCATGGCTTCAAGGAGACTTCTCTCTCATTGTGAAAGGGAGATATGAACTTTTATTCTTGAGTATCCC
GCTTGTGATAATCGCATATGTATTTGCTGACAAATTCACAGTAGCAGGGATGGGGGAAAGCTTCTCTGTCAACCTTGGCC
TGAAATATAAACGGATTGTGAATATCGGGCTGATTATATCGTCGCTGATCACGTCCCTCGTGATTTTGACTGTCGGTATG
CTGCCGTTCCTTGGGCTGATCATTCCGAATATCGTATCCATTTACAGGGGAGACAACCTGAAAAGCAGCCTGCCCCACAC
AGCTCTTTTAGGTGCCGTTTTTGTGCTGCTTTGCGATATATTGGGCAGGATTATCATTTTTCCGTACGAAATCTCGATTG
GCTTGATGGTCGGAGTCATCGGCAGCGGTATTTTCCTGTATATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

100

0.528