Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   PUV55_RS08595 Genome accession   NZ_CP118165
Coordinates   1733487..1735568 (+) Length   693 a.a.
NCBI ID   WP_160428870.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728487..1740568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS08570 (PUV55_08570) - 1728915..1729592 (-) 678 WP_021115350.1 phosphoribosyltransferase family protein -
  PUV55_RS08575 (PUV55_08575) - 1729716..1730525 (+) 810 WP_021119285.1 Cof-type HAD-IIB family hydrolase -
  PUV55_RS08580 (PUV55_08580) - 1730656..1731222 (-) 567 WP_160428872.1 biotin transporter BioY -
  PUV55_RS08585 (PUV55_08585) - 1731305..1732093 (+) 789 WP_160428871.1 BPL-N domain-containing protein -
  PUV55_RS08590 (PUV55_08590) - 1732169..1733374 (+) 1206 WP_010786436.1 cupin domain-containing protein -
  PUV55_RS08595 (PUV55_08595) recG 1733487..1735568 (+) 2082 WP_160428870.1 ATP-dependent DNA helicase RecG Machinery gene
  PUV55_RS08600 (PUV55_08600) - 1735852..1736247 (+) 396 WP_016528649.1 YgiW/YdeI family stress tolerance OB fold protein -
  PUV55_RS08605 (PUV55_08605) - 1736332..1736589 (+) 258 WP_005711125.1 hypothetical protein -
  PUV55_RS08610 (PUV55_08610) - 1736871..1736939 (+) 69 WP_230205912.1 lipoprotein -
  PUV55_RS08615 (PUV55_08615) - 1737025..1737717 (+) 693 WP_160428869.1 AzlC family ABC transporter permease -
  PUV55_RS08620 (PUV55_08620) - 1737717..1738040 (+) 324 WP_010786440.1 AzlD domain-containing protein -
  PUV55_RS08625 (PUV55_08625) - 1738176..1738934 (+) 759 WP_071610590.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77328.50 Da        Isoelectric Point: 8.3399

>NTDB_id=721422 PUV55_RS08595 WP_160428870.1 1733487..1735568(+) (recG) [Glaesserella parasuis strain XP11]
MNQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPLRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEMHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLLFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLTMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQCALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYSKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=721422 PUV55_RS08595 WP_160428870.1 1733487..1735568(+) (recG) [Glaesserella parasuis strain XP11]
ATGAACCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAACGTGCAAGATCTGCTATTCCATTTGCCGCTACGGTATGAAGACCGTACTCGGATCACGCCGATTG
CCGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTACAATTCGGTCGTCGCCCGATT
TTAAGTACCACGATTTCTGACGGCACGAGCAAAATTACTCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCGACTGGCGTAAGGGTCAAAGCCTTTGGTGAGATTAAACGTGGTCGCTTTATGGCAGAAATGCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCCGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTACAGTTGTTGCATCGACCGCCGCCGAGTGTGTCGTCCGAATTATTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGTTGTTGGCACATAATTTGGCAATGCAACAGGTGCGA
ATGGGCGTGCAACAACACTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCTGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTGCGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTAG
TGCAAGGCGATGTGGGTTCAGGTAAAACTCTTGTGGCTGCGTTGGCGGCATTACTGGCGATTGACAATGGTAAACAGGTG
GCGTTAATGGCACCAACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATTGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCTCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTGACGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATCACGACGGTGGCGATTTCGGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTGTTAGAAGCACAAGCGGCGGCAGCCAT
TGCAGAAGATTTGCAATGTGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAACCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACAGTGATCGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGTTGCACCAACTGCGTGGGCGTGTTGGACG
TGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATAGCTGAAAAAGATTTGGAAATTCGTGGTCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACTCCAAACA
GCTAACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-673)

DEAD/DEAH box helicase (DEAD)

(293-408)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

RecG wedge domain (RecG_wedge)

(16-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.037

97.403

0.478
  recG Bacillus subtilis subsp. subtilis str. 168

39.791

96.825

0.385
  recG/mmsA Streptococcus pneumoniae R6

39.177

94.661

0.371
  recG/mmsA Streptococcus pneumoniae R36A

39.177

94.661

0.371