Detailed information NTG0721183

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: NF399_RS11745
• Genome accession: NZ_CP103049
• Coordinates: 2382479..2382988 (-)
• Length: 169 a.a.
• NCBI ID: WP_002434425.1
• Uniprot ID: -
• Organism: Staphylococcus capitis subsp. capitis strain DSM 20326
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2380145..2389458	2382479..2382988	within	0

Gene organization within MGE regions

Location: 2380145..2389458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF399_RS11715	-	2380145..2380402 (+)	258	WP_002434565.1	helix-turn-helix domain-containing protein	-
NF399_RS11720	-	2380473..2380826 (-)	354	WP_002454425.1	membrane protein	-
NF399_RS11725	-	2380910..2381140 (-)	231	WP_002454424.1	hypothetical protein	-
NF399_RS11730	-	2381143..2381472 (-)	330	WP_229716971.1	hypothetical protein	-
NF399_RS11735	-	2381609..2381863 (-)	255	WP_002454422.1	hypothetical protein	-
NF399_RS11740	rpsR	2382190..2382432 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
NF399_RS11745	ssbA	2382479..2382988 (-)	510	WP_002434425.1	single-stranded DNA-binding protein	Machinery gene
NF399_RS11750	rpsF	2383010..2383306 (-)	297	WP_016898402.1	30S ribosomal protein S6	-
NF399_RS11755	-	2383439..2383603 (-)	165	Protein_2265	recombinase family protein	-
NF399_RS11760	-	2383719..2384465 (-)	747	WP_002454420.1	HAD family hydrolase	-
NF399_RS11765	-	2384469..2384885 (-)	417	WP_229716969.1	NUDIX domain-containing protein	-
NF399_RS11770	-	2384882..2385046 (-)	165	WP_229716968.1	hypothetical protein	-
NF399_RS11775	-	2385205..2385774 (-)	570	WP_229716965.1	EamA family transporter	-
NF399_RS11780	-	2385800..2386165 (-)	366	WP_002454417.1	NUDIX hydrolase	-
NF399_RS11785	-	2386178..2386855 (-)	678	WP_002434477.1	hypothetical protein	-
NF399_RS11790	-	2386855..2387898 (-)	1044	WP_016898404.1	aminotransferase class V-fold PLP-dependent enzyme	-
NF399_RS11795	-	2388180..2388509 (+)	330	WP_029625735.1	helix-turn-helix domain-containing protein	-
NF399_RS11800	-	2388643..2389458 (+)	816	WP_002454414.1	GH25 family lysozyme	-

Sequence

Protein

• Length: 169 a.a.
• Molecular weight: 18688.18 Da
• Isoelectric Point: 4.5778

>NTDB_id=721183 NF399_RS11745 WP_002434425.1 2382479..2382988(-) (ssbA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide

• Length: 510 bp

>NTDB_id=721183 NF399_RS11745 WP_002434425.1 2382479..2382988(-) (ssbA) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACTCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.483	100	0.669
ssb	Latilactobacillus sakei subsp. sakei 23K	55.172	100	0.568
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361