Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PUW52_RS08580 Genome accession   NZ_CP118078
Coordinates   1715728..1717704 (-) Length   658 a.a.
NCBI ID   WP_024052702.1    Uniprot ID   A0A413KRF0
Organism   Streptococcus anginosus strain VSI16     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710728..1722704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS08560 (PUW52_08560) - 1710958..1711146 (-) 189 WP_070583983.1 hypothetical protein -
  PUW52_RS08565 (PUW52_08565) - 1711257..1712753 (-) 1497 WP_024052253.1 primase C-terminal domain-containing protein -
  PUW52_RS08570 (PUW52_08570) - 1712756..1713253 (-) 498 WP_024052254.1 hypothetical protein -
  PUW52_RS08575 (PUW52_08575) amiA3 1713551..1715530 (-) 1980 WP_024052701.1 peptide ABC transporter substrate-binding protein Regulator
  PUW52_RS08580 (PUW52_08580) amiA3 1715728..1717704 (-) 1977 WP_024052702.1 peptide ABC transporter substrate-binding protein Regulator
  PUW52_RS08585 (PUW52_08585) - 1717871..1718554 (-) 684 WP_101749772.1 phenylalanine--tRNA ligase beta subunit-related protein -
  PUW52_RS08590 (PUW52_08590) - 1718720..1720330 (-) 1611 WP_024052704.1 CTP synthase -
  PUW52_RS08595 (PUW52_08595) rpoE 1720513..1721100 (-) 588 WP_003035581.1 DNA-directed RNA polymerase subunit delta -
  PUW52_RS08600 (PUW52_08600) tig 1721338..1722621 (-) 1284 WP_274984309.1 trigger factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72354.88 Da        Isoelectric Point: 6.5469

>NTDB_id=721036 PUW52_RS08580 WP_024052702.1 1715728..1717704(-) (amiA3) [Streptococcus anginosus strain VSI16]
MKKSKIIAVAGLALLTSGLLAACSGSKSNSTEKKFGYVYAGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKDAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNQPEPYWNSKTTSAILWPVNAEFLKSKGDKFGQSTNPSSILYNGPFLMKAITAKSAVEYVKNNNYWDK
DNVNVDSIKLAYYDGQDQDSLARNFKDGAYTYARLFPASSNFATFEKDFKDNIYTSEAGAGTAVLGLNIDRQTYNHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRDSYAAQVNGKDGAAKAIRNMFVPSDFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPDKAKAKFAKAKGALQAQGVQFPIHIDVPVIETSKNFVARIQSMKQSIEKVLGKENVVMDLNMMSEDDVM
NITYYAPNAASEDWDLSGIVGWTPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLILPTMASTGAATFVSRIEPFSGPFAQTGSKGSSTYFKYIKVGNDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=721036 PUW52_RS08580 WP_024052702.1 1715728..1717704(-) (amiA3) [Streptococcus anginosus strain VSI16]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTTGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCAAA
ATCGAACTCCACAGAAAAAAAGTTTGGTTATGTATATGCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGATGCCAAATGGTACACATCAGA
AGGCGAAGAATATGCAGAAGTTAAGGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCTGATAAGAAATCAGAAGCTC
TTTATCTTGTTCAAAACTCAATTAAAGGTTTGGATGCTTATGTAAATGGTCAAACAAAAGACTTTTCAACTGTAGGCGTG
AAAGCTGTCGATGATTATACTGTTCAGTATACATTGAACCAACCAGAACCTTACTGGAATTCAAAAACAACGTCAGCTAT
TCTTTGGCCAGTCAATGCAGAATTTTTGAAATCTAAGGGAGATAAATTCGGTCAATCAACGAATCCTAGTTCCATTCTTT
ACAATGGTCCATTCCTTATGAAAGCTATTACAGCTAAGTCTGCAGTAGAATATGTTAAAAACAACAATTATTGGGATAAG
GATAATGTAAACGTTGATAGCATCAAGTTGGCTTATTATGATGGTCAAGACCAAGACTCATTAGCACGTAACTTTAAAGA
TGGCGCTTATACGTATGCACGTCTCTTCCCAGCAAGTTCAAACTTTGCAACTTTTGAAAAGGACTTCAAAGACAATATCT
ATACATCAGAAGCAGGTGCAGGAACAGCGGTTTTAGGACTTAATATTGACCGTCAAACATACAACCACACTGCTAAAAAA
ACAGATGAACAAAAAAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCTTTGAACTTTGCACTTGATCG
CGATTCTTACGCTGCACAAGTCAATGGTAAAGATGGCGCTGCTAAAGCAATCCGCAATATGTTTGTACCGTCTGACTTTG
TCCAAGTTGGAGAAAAATCATTTAGCGATGTTGTAGAAGAAAAATTAGCTAGCTATGGTGATGACTGGAAGGGTGTCAAA
TTAGCAGATTCACAAAACGGTTTGTACAATCCAGACAAAGCAAAAGCGAAATTTGCAAAAGCAAAAGGAGCATTGCAAGC
TCAAGGTGTGCAATTCCCAATCCACATAGATGTTCCTGTAATTGAAACTTCTAAAAACTTTGTTGCTCGTATACAATCTA
TGAAACAATCTATTGAAAAAGTGCTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGATGATGTAATG
AACATCACTTATTATGCTCCGAATGCAGCTAGCGAAGATTGGGATCTCTCAGGTATCGTTGGTTGGACTCCTGACTATCA
AGACCCATCTACTTATCTTGACATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTGACAGATAGCTCTTTGATTTTACCAACAATGGCTTC
AACGGGTGCCGCAACATTTGTTTCACGTATCGAACCATTCTCAGGTCCATTTGCGCAAACAGGTAGCAAAGGTAGCTCAA
CCTACTTCAAATACATTAAAGTTGGTAACGATGCTGTCACTAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCTGAGTCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A413KRF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.581

100

0.637
  amiA3 Streptococcus thermophilus LMG 18311

63.278

100

0.634
  amiA Streptococcus salivarius strain HSISS4

62.462

100

0.625