Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PUW52_RS08230 Genome accession   NZ_CP118078
Coordinates   1637370..1639385 (-) Length   671 a.a.
NCBI ID   WP_024052680.1    Uniprot ID   A0A412PMT4
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632370..1644385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS08210 (PUW52_08210) - 1632765..1633979 (-) 1215 WP_024052676.1 pyridoxal phosphate-dependent aminotransferase -
  PUW52_RS08215 (PUW52_08215) - 1634131..1634583 (+) 453 WP_020999785.1 universal stress protein -
  PUW52_RS08220 (PUW52_08220) - 1634629..1636017 (-) 1389 WP_024052677.1 Cof-type HAD-IIB family hydrolase -
  PUW52_RS08225 (PUW52_08225) - 1636082..1637044 (+) 963 WP_024052678.1 asparaginase -
  PUW52_RS08230 (PUW52_08230) recG/mmsA 1637370..1639385 (-) 2016 WP_024052680.1 ATP-dependent DNA helicase RecG Machinery gene
  PUW52_RS08235 (PUW52_08235) alr 1639489..1640595 (-) 1107 WP_024052681.1 alanine racemase -
  PUW52_RS08240 (PUW52_08240) acpS 1640582..1640947 (-) 366 WP_003026132.1 holo-ACP synthase -
  PUW52_RS08245 (PUW52_08245) - 1641055..1642095 (-) 1041 WP_070672325.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75789.54 Da        Isoelectric Point: 5.8689

>NTDB_id=721027 PUW52_RS08230 WP_024052680.1 1637370..1639385(-) (recG/mmsA) [Streptococcus anginosus strain VSI16]
MNLHQPLTVLPGVGPKSAEKFTKLGIESLQDLLLYFPFRYEDFKSKNVLELEDGEKAVISGVVTTPANVQYYGYKRNRLR
FTIKQDEMVLAVNFFNQPYLADKVEVGSTIAIFGKWDKAKASLTGMKILAQVEDDLQPVYRVAQGISQASLVKVIKTAFD
QGLELLLEENLPQVLLERYQLLGRNQAVRAMHFPRDWAEYKQALRRIKFEELFYFQMQLQVLKCETKDVSQGLIIPWRAD
LLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVGSGKTVVAGLAMYTTYTAGLQSALMVPTEILAEQHFDS
LSQLFPELRIILLTGGMKTAERRQALEAIEDGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLRKELQRGAQVYVISPLIEESEALDLKN
AIVLEEELKAYFGDKAQVALLHGKMKSEEKDTIMQDFKEGKTDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEETRK
VASQIVSTPDWRTNADWHIVALHLDKQDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=721027 PUW52_RS08230 WP_024052680.1 1637370..1639385(-) (recG/mmsA) [Streptococcus anginosus strain VSI16]
ATGAATTTACACCAACCTTTAACGGTTCTGCCGGGTGTGGGGCCGAAATCTGCTGAAAAATTTACTAAGCTGGGAATTGA
AAGCCTGCAAGATTTGCTGCTCTATTTTCCATTTCGCTATGAAGATTTTAAAAGTAAGAATGTGTTAGAACTGGAAGATG
GTGAAAAGGCAGTTATTTCAGGGGTGGTGACTACACCAGCAAATGTCCAGTACTATGGCTACAAGCGCAATCGCCTGCGT
TTTACCATAAAGCAGGATGAAATGGTACTTGCAGTCAACTTCTTTAACCAACCTTATCTAGCAGACAAGGTGGAGGTTGG
CTCAACCATTGCTATTTTCGGAAAATGGGATAAGGCAAAAGCTAGTTTGACCGGGATGAAAATTCTAGCACAAGTAGAAG
ATGATTTGCAGCCAGTTTATCGAGTAGCTCAAGGGATTAGTCAAGCCAGTTTGGTCAAGGTCATTAAGACAGCCTTTGAC
CAAGGGTTGGAATTGCTCTTGGAGGAAAATTTGCCCCAAGTGTTGTTAGAACGCTATCAGTTGCTAGGACGGAATCAGGC
TGTGCGAGCAATGCATTTTCCAAGGGATTGGGCAGAGTACAAGCAGGCTTTGCGTCGGATCAAGTTTGAAGAGCTTTTTT
ACTTTCAAATGCAATTGCAAGTTCTCAAATGTGAAACAAAAGATGTTAGTCAGGGCTTAATTATTCCTTGGCGGGCAGAT
TTGCTAGAAAAGAAAAAAGCTACTCTACCTTTTGAGTTAACGGCTGCTCAAGAGCGCAGTCTAAACGAGATTTTACAGGA
TATGAAATCGCCAGCTCACATGAACAGGCTCTTGCAGGGAGATGTCGGAAGCGGAAAGACGGTGGTTGCAGGTTTAGCTA
TGTATACTACTTATACAGCTGGTTTGCAGTCTGCTCTCATGGTGCCAACGGAAATCTTGGCAGAGCAGCACTTTGATAGC
TTGAGCCAACTTTTTCCTGAACTGCGGATAATTCTGTTGACAGGGGGAATGAAGACAGCAGAACGCAGACAGGCACTAGA
AGCTATTGAGGATGGTCAGGTGGATATGATCGTCGGCACTCATGCTTTGATTCAAGAAGGCGTGACATATCATCGGCTCG
GTCTGGTGATTATTGATGAACAGCACCGTTTTGGAGTGGGACAGAGACGAATTTTGCGGGAAAAAGGAAATAATCCTGAT
GTGCTCATGATGACTGCAACGCCCATTCCTAGGACGCTTGCTATTACTGCTTTTGGTGATATGGATGTGTCCATTATTGA
CCAAATGCCAGCTGGGCGTAAGCCGATTATCACCCGTTGGGTCAAGCATGAGCAGCTGGAAGTAGTTCTGGATTGGTTGA
GGAAAGAGCTGCAACGAGGTGCTCAGGTCTATGTCATCTCTCCTTTGATTGAGGAGTCGGAAGCTCTGGATCTGAAAAAT
GCGATTGTTTTGGAAGAGGAATTAAAGGCTTATTTCGGTGACAAAGCACAAGTAGCTCTGCTACATGGTAAAATGAAGAG
CGAAGAAAAAGATACCATTATGCAGGATTTTAAGGAAGGGAAAACGGACATTCTGGTTTCCACGACTGTTATTGAAGTCG
GTGTCAATGTGCCCAATGCTACGGTCATGCTAATCATGGATGCGGACCGATTTGGGCTCAGCCAGCTTCATCAGTTACGT
GGTCGAGTAGGACGTGGAGATAAACAGTCTTATGCGGTTCTTGTAGCCAATCCTAAGACAGAATCTGGCAAGAAACGCAT
GAAAATCATGACGGAAACGACTGACGGTTTTGTCTTAGCTGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAAATCTTCG
GCACTCGTCAGTCCGGTTTGCCGGAATTTCAGGTGGCAGATATTGTAGAGGATTATCCAATTTTAGAGGAGACCAGAAAA
GTCGCCAGTCAAATTGTGTCCACTCCTGATTGGCGAACGAATGCAGATTGGCATATTGTAGCGCTTCATTTGGACAAGCA
GGACTACTTGGATTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

RecG wedge domain (RecG_wedge)

(12-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PMT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.838

100

0.788
  recG/mmsA Streptococcus pneumoniae R36A

78.838

100

0.788
  recG Bacillus subtilis subsp. subtilis str. 168

47.493

100

0.48
  recG Neisseria meningitidis strain C311

38.71

97.019

0.376