Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PUW49_RS10495 Genome accession   NZ_CP118054
Coordinates   2049892..2050482 (-) Length   196 a.a.
NCBI ID   WP_003026647.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044892..2055482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW49_RS10470 (PUW49_10470) spx 2045234..2045632 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  PUW49_RS10475 (PUW49_10475) recA 2045719..2046864 (-) 1146 WP_003026640.1 recombinase RecA Machinery gene
  PUW49_RS10480 (PUW49_10480) cinA 2046909..2048180 (-) 1272 WP_070242126.1 competence/damage-inducible protein A Machinery gene
  PUW49_RS10485 (PUW49_10485) - 2048781..2049200 (+) 420 Protein_2029 EamA family transporter -
  PUW49_RS10490 (PUW49_10490) - 2049303..2049881 (-) 579 WP_070242127.1 DNA-3-methyladenine glycosylase I -
  PUW49_RS10495 (PUW49_10495) ruvA 2049892..2050482 (-) 591 WP_003026647.1 Holliday junction branch migration protein RuvA Machinery gene
  PUW49_RS10500 (PUW49_10500) - 2050644..2051087 (+) 444 WP_024053224.1 helix-turn-helix transcriptional regulator -
  PUW49_RS10505 (PUW49_10505) mutL 2051536..2053483 (-) 1948 Protein_2033 DNA mismatch repair endonuclease MutL -
  PUW49_RS10510 (PUW49_10510) - 2053737..2054177 (+) 441 WP_024053226.1 LytTR family DNA-binding domain-containing protein -
  PUW49_RS10515 (PUW49_10515) - 2054174..2054632 (+) 459 WP_024053227.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21581.09 Da        Isoelectric Point: 7.1974

>NTDB_id=720938 PUW49_RS10495 WP_003026647.1 2049892..2050482(-) (ruvA) [Streptococcus anginosus strain VSI37]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNKELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=720938 PUW49_RS10495 WP_003026647.1 2049892..2050482(-) (ruvA) [Streptococcus anginosus strain VSI37]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTTAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAGCAGATGGTGTTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATAAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCTGCCCTCAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.772

100

0.852
  ruvA Streptococcus pneumoniae D39

84.772

100

0.852
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423