Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW983_RS07565 Genome accession   NZ_CP102970
Coordinates   1583597..1584043 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 09-G-F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578597..1589043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW983_RS07535 (NW983_07535) gcvPA 1579523..1580869 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW983_RS07540 (NW983_07540) gcvT 1580889..1581980 (-) 1092 WP_258411691.1 glycine cleavage system aminomethyltransferase GcvT -
  NW983_RS07545 (NW983_07545) - 1582139..1582663 (-) 525 WP_001015120.1 shikimate kinase -
  NW983_RS07550 (NW983_07550) - 1582653..1582799 (-) 147 WP_001789879.1 hypothetical protein -
  NW983_RS07555 (NW983_07555) comGF 1582896..1583393 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW983_RS07560 (NW983_07560) comGE 1583311..1583610 (-) 300 WP_258411692.1 competence protein ComGE Machinery gene
  NW983_RS07565 (NW983_07565) comGD 1583597..1584043 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW983_RS07570 (NW983_07570) comGC 1584021..1584332 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW983_RS07575 (NW983_07575) comGB 1584346..1585416 (-) 1071 WP_258411693.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW983_RS07580 (NW983_07580) comGA 1585388..1586362 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW983_RS07585 (NW983_07585) - 1586414..1587037 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW983_RS07590 (NW983_07590) - 1587034..1587363 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW983_RS07595 (NW983_07595) - 1587363..1588349 (-) 987 WP_000161314.1 ROK family glucokinase -
  NW983_RS07600 (NW983_07600) - 1588346..1588549 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720830 NW983_RS07565 WP_001788899.1 1583597..1584043(-) (comGD) [Staphylococcus aureus strain 09-G-F]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720830 NW983_RS07565 WP_001788899.1 1583597..1584043(-) (comGD) [Staphylococcus aureus strain 09-G-F]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1