Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PUW71_RS09635 Genome accession   NZ_CP118053
Coordinates   1868241..1868831 (-) Length   196 a.a.
NCBI ID   WP_195916288.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1863241..1873831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS09610 (PUW71_09610) spx 1863583..1863981 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  PUW71_RS09615 (PUW71_09615) recA 1864068..1865213 (-) 1146 WP_003026640.1 recombinase RecA Machinery gene
  PUW71_RS09620 (PUW71_09620) cinA 1865258..1866529 (-) 1272 WP_070242126.1 competence/damage-inducible protein A Machinery gene
  PUW71_RS09625 (PUW71_09625) - 1867239..1867549 (+) 311 Protein_1856 EamA family transporter -
  PUW71_RS09630 (PUW71_09630) - 1867652..1868230 (-) 579 WP_070242127.1 DNA-3-methyladenine glycosylase I -
  PUW71_RS09635 (PUW71_09635) ruvA 1868241..1868831 (-) 591 WP_195916288.1 Holliday junction branch migration protein RuvA Machinery gene
  PUW71_RS09640 (PUW71_09640) - 1868993..1869436 (+) 444 WP_024053224.1 helix-turn-helix transcriptional regulator -
  PUW71_RS09645 (PUW71_09645) hexB 1869885..1871831 (-) 1947 WP_024053225.1 DNA mismatch repair endonuclease MutL Machinery gene
  PUW71_RS09650 (PUW71_09650) - 1872085..1872525 (+) 441 WP_070242129.1 LytTR family DNA-binding domain-containing protein -
  PUW71_RS09655 (PUW71_09655) - 1872522..1872980 (+) 459 WP_024053227.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21511.98 Da        Isoelectric Point: 6.4894

>NTDB_id=720829 PUW71_RS09635 WP_195916288.1 1868241..1868831(-) (ruvA) [Streptococcus anginosus strain VSI40]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFSTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNKELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=720829 PUW71_RS09635 WP_195916288.1 1868241..1868831(-) (ruvA) [Streptococcus anginosus strain VSI40]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTTAGAG
AGGATGCCCAGCTCCTCTACGGTTTTAGCACAGAGGATGAAAAACAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAGCAGATGGTGTTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATAAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCTGCCCTCAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.264

100

0.847
  ruvA Streptococcus pneumoniae D39

84.264

100

0.847
  ruvA Streptococcus pneumoniae TIGR4

84.264

100

0.847
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.976

100

0.429