Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW965_RS02470 Genome accession   NZ_CP102968
Coordinates   530672..531241 (+) Length   189 a.a.
NCBI ID   WP_258410433.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 525672..536241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS02445 (NW965_02440) cysE 526885..527532 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW965_RS02450 (NW965_02445) cysS 527516..528916 (+) 1401 WP_117232129.1 cysteine--tRNA ligase -
  NW965_RS02455 (NW965_02450) - 528909..529313 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW965_RS02460 (NW965_02455) rlmB 529321..530067 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW965_RS02465 (NW965_02460) - 530067..530591 (+) 525 WP_258411987.1 NYN domain-containing protein -
  NW965_RS02470 (NW965_02465) sigH 530672..531241 (+) 570 WP_258410433.1 RNA polymerase sigma factor Regulator
  NW965_RS02475 (NW965_02470) rpmG 531356..531499 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW965_RS02480 (NW965_02475) secE 531555..531737 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW965_RS02485 (NW965_02480) nusG 531750..532298 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW965_RS02490 (NW965_02485) rplK 532479..532901 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW965_RS02495 (NW965_02490) rplA 533109..533801 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW965_RS02500 (NW965_02495) rplJ 534073..534573 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW965_RS02505 (NW965_02500) rplL 534617..534985 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW965_RS02510 (NW965_02505) - 535160..535768 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=720776 NW965_RS02470 WP_258410433.1 530672..531241(+) (sigH) [Staphylococcus aureus strain 13-G-52]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720776 NW965_RS02470 WP_258410433.1 530672..531241(+) (sigH) [Staphylococcus aureus strain 13-G-52]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGATCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATAAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

98.942

100

0.989