Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   NW955_RS07555 Genome accession   NZ_CP102966
Coordinates   1575746..1576045 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain 29-P-01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570746..1581045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW955_RS07530 (NW955_07530) gcvPA 1571958..1573304 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW955_RS07535 (NW955_07535) gcvT 1573324..1574415 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  NW955_RS07540 (NW955_07540) - 1574574..1575098 (-) 525 WP_001015120.1 shikimate kinase -
  NW955_RS07545 (NW955_07545) - 1575088..1575234 (-) 147 WP_001789879.1 hypothetical protein -
  NW955_RS07550 (NW955_07550) comGF 1575331..1575828 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW955_RS07555 (NW955_07555) comGE 1575746..1576045 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW955_RS07560 (NW955_07560) comGD 1576032..1576478 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW955_RS07565 (NW955_07565) comGC 1576456..1576767 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW955_RS07570 (NW955_07570) comGB 1576781..1577851 (-) 1071 WP_258412557.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW955_RS07575 (NW955_07575) comGA 1577823..1578797 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW955_RS07580 (NW955_07580) - 1578849..1579472 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW955_RS07585 (NW955_07585) - 1579469..1579798 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW955_RS07590 (NW955_07590) - 1579798..1580784 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW955_RS07595 (NW955_07595) - 1580781..1580984 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=720707 NW955_RS07555 WP_000844413.1 1575746..1576045(-) (comGE) [Staphylococcus aureus strain 29-P-01]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=720707 NW955_RS07555 WP_000844413.1 1575746..1576045(-) (comGE) [Staphylococcus aureus strain 29-P-01]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99