Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PUW62_RS08490 Genome accession   NZ_CP118046
Coordinates   1677124..1679139 (-) Length   671 a.a.
NCBI ID   WP_164232009.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672124..1684139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS08470 (PUW62_08470) - 1672519..1673733 (-) 1215 WP_024052676.1 pyridoxal phosphate-dependent aminotransferase -
  PUW62_RS08475 (PUW62_08475) - 1673885..1674337 (+) 453 WP_020999785.1 universal stress protein -
  PUW62_RS08480 (PUW62_08480) - 1674383..1675771 (-) 1389 WP_164232011.1 Cof-type HAD-IIB family hydrolase -
  PUW62_RS08485 (PUW62_08485) - 1675836..1676798 (+) 963 WP_024052678.1 asparaginase -
  PUW62_RS08490 (PUW62_08490) recG/mmsA 1677124..1679139 (-) 2016 WP_164232009.1 ATP-dependent DNA helicase RecG Machinery gene
  PUW62_RS08495 (PUW62_08495) alr 1679243..1680349 (-) 1107 WP_024052681.1 alanine racemase -
  PUW62_RS08500 (PUW62_08500) acpS 1680336..1680701 (-) 366 WP_003026132.1 holo-ACP synthase -
  PUW62_RS08505 (PUW62_08505) - 1680809..1681849 (-) 1041 WP_070672325.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75759.51 Da        Isoelectric Point: 5.8689

>NTDB_id=720699 PUW62_RS08490 WP_164232009.1 1677124..1679139(-) (recG/mmsA) [Streptococcus anginosus strain VSI52]
MNLHQPLTVLPGVGPKSAEKFTKLGIESLQDLLLYFPFRYEDFKSKNVLELEDGEKAVISGVVTTPANVQYYGYKRNRLR
FTIKQDEMVLAVNFFNQPYLADKVEVGSTIAIFGKWDKAKASLTGMKILAQVEDDLQPVYRVAQGISQASLVKVIKTAFD
QGLELLLEENLPQVLLERYQLLGRNQAVRAMHFPRDWAEYKQALRRIKFEELFYFQMQLQVLKCETKDVSQGLIIPWRAD
LLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVGSGKTVVAGLAMYTTYTAGLQSALMVPTEILAEQHFDS
LSQLFPELRIILLTGGMKTAERRQALEAIEDGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLRKELQRGAQVYVISPLIEESEALDLKN
AIVLEEELKAYFGDKAQVALLHGKMKSEEKDTIMQDFKEGKTDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARK
VASQIVSTPDWRTNADWHIVALHLDKQDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=720699 PUW62_RS08490 WP_164232009.1 1677124..1679139(-) (recG/mmsA) [Streptococcus anginosus strain VSI52]
ATGAATTTACACCAACCTTTAACGGTTCTGCCGGGTGTGGGGCCGAAATCTGCTGAAAAATTTACTAAGCTGGGAATTGA
AAGCCTGCAAGATTTGCTGCTCTATTTTCCATTTCGCTATGAAGATTTTAAAAGTAAGAATGTGTTAGAACTGGAAGATG
GTGAAAAGGCAGTTATTTCAGGGGTGGTGACTACACCAGCAAATGTCCAGTACTATGGCTACAAGCGCAATCGCCTGCGT
TTTACCATAAAGCAGGATGAAATGGTACTTGCAGTCAACTTCTTTAACCAACCTTATCTAGCAGACAAGGTGGAGGTTGG
CTCAACCATTGCTATTTTCGGAAAATGGGATAAGGCAAAAGCTAGTTTGACCGGGATGAAAATTCTAGCACAAGTAGAAG
ATGATTTGCAGCCAGTTTATCGAGTAGCTCAAGGGATTAGTCAAGCCAGTTTGGTCAAGGTCATTAAGACAGCCTTTGAC
CAAGGGTTGGAATTGCTCTTGGAGGAAAATTTGCCCCAAGTGTTGTTAGAACGCTATCAGTTGCTAGGACGGAATCAGGC
TGTGCGAGCAATGCATTTTCCAAGGGATTGGGCAGAGTACAAGCAGGCTTTGCGTCGGATCAAGTTTGAAGAGCTTTTTT
ACTTTCAAATGCAATTGCAAGTTCTCAAATGTGAAACAAAAGATGTTAGTCAGGGCTTAATTATTCCTTGGCGGGCAGAT
TTGCTAGAAAAGAAAAAAGCTACTCTACCTTTTGAGTTAACGGCTGCTCAAGAGCGCAGTCTAAACGAGATTTTACAGGA
TATGAAATCGCCAGCTCACATGAACAGGCTCTTGCAGGGAGATGTCGGAAGCGGAAAGACGGTGGTTGCAGGTTTAGCTA
TGTATACTACTTATACAGCTGGTTTGCAGTCTGCTCTCATGGTGCCAACGGAAATCTTGGCAGAGCAGCACTTTGATAGC
TTGAGCCAACTTTTTCCTGAACTGCGGATAATTCTGTTGACAGGGGGAATGAAGACAGCAGAACGCAGACAGGCACTAGA
AGCTATTGAGGATGGTCAGGTGGATATGATCGTCGGCACTCATGCTTTGATTCAAGAAGGCGTGACATATCATCGGCTCG
GTCTGGTGATTATTGATGAACAGCACCGTTTTGGAGTGGGACAGAGACGAATTTTGCGGGAAAAAGGAAATAATCCTGAT
GTGCTCATGATGACTGCAACGCCCATTCCTAGGACGCTTGCTATTACTGCTTTTGGTGATATGGATGTGTCCATTATTGA
CCAAATGCCAGCTGGGCGTAAGCCGATTATCACCCGTTGGGTCAAGCATGAGCAGCTGGAAGTAGTTCTGGATTGGTTGA
GGAAAGAGCTGCAACGAGGTGCTCAGGTCTATGTCATCTCTCCTTTGATTGAGGAGTCGGAAGCTCTGGATCTGAAAAAT
GCGATTGTTTTGGAAGAGGAATTAAAGGCTTATTTCGGTGACAAAGCACAAGTAGCTCTGCTACATGGTAAAATGAAGAG
CGAAGAAAAAGATACCATTATGCAGGATTTTAAGGAAGGGAAAACGGACATTCTGGTTTCCACGACTGTTATTGAAGTCG
GTGTCAATGTGCCCAATGCTACGGTCATGCTAATCATGGATGCGGACCGATTTGGGCTCAGCCAGCTTCATCAGTTACGT
GGTCGAGTAGGACGTGGAGATAAACAGTCTTATGCGGTTCTTGTAGCCAATCCTAAGACAGAATCTGGCAAGAAACGCAT
GAAAATCATGACGGAAACGACTGACGGTTTTGTCTTAGCTGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAAATCTTCG
GCACTCGTCAGTCCGGTTTGCCGGAATTTCAGGTGGCAGATATTGTAGAGGATTATCCAATTTTAGAGGAGGCCAGAAAA
GTCGCTAGTCAAATTGTGTCCACTCCTGATTGGCGAACGAATGCAGATTGGCATATTGTAGCGCTTCATTTGGACAAGCA
GGACTACTTGGATTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(254-411)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-660)

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

RecG wedge domain (RecG_wedge)

(12-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.987

100

0.79
  recG/mmsA Streptococcus pneumoniae R36A

78.987

100

0.79
  recG Bacillus subtilis subsp. subtilis str. 168

47.64

100

0.481
  recG Neisseria meningitidis strain C311

38.863

97.019

0.377