Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PT798_RS09860 Genome accession   NZ_CP117979
Coordinates   2055816..2056418 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain B-41012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050816..2061418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS09840 yajC 2052312..2052572 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  PT798_RS09845 tgt 2052591..2053730 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  PT798_RS09850 queA 2053753..2054778 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  PT798_RS09855 ruvB 2054780..2055784 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PT798_RS09860 ruvA 2055816..2056418 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  PT798_RS09865 - 2056432..2056887 (-) 456 WP_000368903.1 ACT domain-containing protein -
  PT798_RS09870 obgE 2056900..2058192 (-) 1293 WP_000496100.1 GTPase ObgE -
  PT798_RS09875 rpmA 2058676..2058960 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  PT798_RS09880 - 2058972..2059292 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  PT798_RS09885 rplU 2059298..2059606 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  PT798_RS09890 mreD 2059842..2060372 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  PT798_RS09895 mreC 2060372..2061214 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=720128 PT798_RS09860 WP_000271547.1 2055816..2056418(-) (ruvA) [Staphylococcus aureus strain B-41012]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=720128 PT798_RS09860 WP_000271547.1 2055816..2056418(-) (ruvA) [Staphylococcus aureus strain B-41012]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425