Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PT723_RS16745 Genome accession   NZ_CP117971
Coordinates   3371273..3371902 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B-1109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3366273..3376902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT723_RS16730 helD 3366515..3368569 (-) 2055 WP_001295354.1 DNA helicase IV -
  PT723_RS16735 yccF 3368692..3369138 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PT723_RS16740 yccS 3369148..3371310 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PT723_RS16745 sxy/tfoX 3371273..3371902 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PT723_RS16750 sulA 3372121..3372630 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PT723_RS16755 ompA 3372987..3374027 (+) 1041 WP_137044370.1 porin OmpA -
  PT723_RS16760 matP 3374103..3374555 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PT723_RS16765 ycbZ 3374741..3376501 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=719939 PT723_RS16745 WP_000839153.1 3371273..3371902(-) (sxy/tfoX) [Escherichia coli strain B-1109]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=719939 PT723_RS16745 WP_000839153.1 3371273..3371902(-) (sxy/tfoX) [Escherichia coli strain B-1109]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1