Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NVB75_RS11655 Genome accession   NZ_CP102929
Coordinates   2605207..2607432 (-) Length   741 a.a.
NCBI ID   WP_258347226.1    Uniprot ID   -
Organism   Pseudomonas sp. CBS     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2600207..2612432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVB75_RS11620 (NVB75_11620) murB 2600576..2601595 (-) 1020 WP_258347222.1 UDP-N-acetylmuramate dehydrogenase -
  NVB75_RS11625 (NVB75_11625) - 2601592..2602056 (-) 465 WP_010165863.1 low molecular weight protein-tyrosine-phosphatase -
  NVB75_RS11630 (NVB75_11630) kdsB 2602056..2602820 (-) 765 WP_258347223.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NVB75_RS11635 (NVB75_11635) - 2602817..2603002 (-) 186 WP_003174668.1 Trm112 family protein -
  NVB75_RS11640 (NVB75_11640) lpxK 2603027..2604037 (-) 1011 WP_258347224.1 tetraacyldisaccharide 4'-kinase -
  NVB75_RS11645 (NVB75_11645) - 2604037..2604465 (-) 429 WP_258347225.1 biopolymer transporter ExbD -
  NVB75_RS11650 (NVB75_11650) exbB 2604462..2605097 (-) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NVB75_RS11655 (NVB75_11655) comA 2605207..2607432 (-) 2226 WP_258347226.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NVB75_RS11660 (NVB75_11660) - 2607568..2608083 (+) 516 WP_258347227.1 DUF2062 domain-containing protein -
  NVB75_RS11665 (NVB75_11665) - 2608087..2609457 (-) 1371 Protein_2319 histidine kinase sensor domain-containing protein -
  NVB75_RS11670 (NVB75_11670) - 2609444..2610172 (-) 729 WP_258347228.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80711.88 Da        Isoelectric Point: 10.0588

>NTDB_id=719787 NVB75_RS11655 WP_258347226.1 2605207..2607432(-) (comA) [Pseudomonas sp. CBS]
MRTGMFALALGLLALRFLPALPSSGWLLLMPVLALMLLPFRTYPLAFFLLGLGWACLSAQWALDDRLAPRLDGQTRWVEG
RVTGLPQQTGDGVRFELTDSRSRKDLLPKRIRVSWRGGPAVQSGERWRLAVTLKRPSGLLNAEGFDYEAWLLAQRIGATG
SVKDGQKLAPARHAWREGIRQRLLAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARFGCWPKPLPWLPWACGLGFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLILEPL
ASLQPGFWLSFGAVAVLILAFSGRLGPWSAWQAWTRAQWLIAIGLFPLLLVLGLPISLSGPLANLFAVPWISLVVLPLAL
LGTVLLPLPYIGEGLLWLAGGTLDWLFKALALLAQHLPAWIPAQVPMGYWLVSLLGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRESIPHGRVEVVQLDVGQGLAIILRTRNHVLLYDAGPRSGEFDLGARVVLPALRKLGVAGLDMMLLSHADADHAGGA
LAVAQGLPIKRVVGGETARLSSTLGTQACVSGEWWEWDGVTFELWQWPDATDGNQMSCVLLVQANGERLLLTGDIDREAE
RALLATPLGAPVDWLQAPHHGSRSSSSWPFLQRLAPKAVLISRGRSNAFGHPHPQVLERYQALGSLIYDSAEHGALRLQL
GTFQPPEAARSQRRFWREPPP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=719787 NVB75_RS11655 WP_258347226.1 2605207..2607432(-) (comA) [Pseudomonas sp. CBS]
ATGAGAACCGGGATGTTTGCACTCGCGCTGGGGCTGCTCGCCCTGCGTTTTTTACCGGCGTTACCGTCCAGCGGCTGGCT
GCTGCTGATGCCGGTGTTGGCCCTGATGCTGCTGCCTTTTCGCACCTATCCGCTGGCGTTTTTCCTGCTTGGCCTGGGCT
GGGCGTGCCTGAGTGCGCAGTGGGCGCTGGATGACCGGTTGGCACCGCGTCTGGATGGCCAGACCCGCTGGGTGGAGGGG
CGAGTTACCGGGTTACCGCAGCAGACAGGTGACGGTGTGCGCTTTGAGCTGACCGACAGCCGGTCACGCAAGGACCTGCT
TCCGAAGCGCATCCGTGTGTCCTGGCGTGGCGGGCCAGCGGTTCAGAGCGGTGAGCGCTGGCGGTTGGCCGTCACCCTCA
AGCGTCCCTCCGGTTTGCTCAATGCCGAGGGGTTTGACTATGAAGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACGGGT
TCGGTCAAGGATGGCCAGAAGCTGGCGCCTGCGCGGCATGCCTGGCGCGAAGGGATTCGGCAGCGGCTGTTGGCGGTGGA
TGCCCAAGGGCGAGAGGCGGGCCTGGCGGCGCTGGTGCTCGGGGATGGTTCCGGGCTGGCCGCCGAGGATTGGCGGGTTC
TGCAAGACACCGGTACCGTGCATTTATTGGTGATTTCCGGGCAGCACATTGGGCTGCTGGCAGGGTTGATCTATGGCCTG
GTCGCCGGCTTGGCACGCTTCGGGTGTTGGCCGAAACCCTTGCCGTGGTTGCCCTGGGCCTGCGGCCTGGGGTTTGCTGC
GGCGCTGGGCTATGGCTTGCTGGCGGGTTTCGAAGTGCCGGTGCAACGGGCCTGCGTGATGGTGGGATTGGTCCTGCTGT
GGCGCCTGCGGTTTCGTCACCTGGGGATCTGGTGGCCGCTGTTGCTGGCGCTGAACGCCGTGCTGATCCTCGAGCCACTG
GCCAGCCTGCAACCGGGGTTCTGGTTGTCCTTTGGGGCGGTGGCGGTGCTGATCCTGGCGTTCAGTGGCAGGCTGGGTCC
CTGGAGTGCCTGGCAGGCCTGGACCCGGGCCCAGTGGTTGATTGCCATCGGCCTGTTTCCGCTGCTGCTGGTGCTCGGTT
TGCCCATCAGCCTGAGCGGGCCGCTGGCCAACCTGTTCGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTG
CTGGGTACGGTGTTATTGCCGCTGCCTTATATAGGTGAAGGTTTGTTATGGCTGGCGGGCGGCACACTGGACTGGCTGTT
CAAGGCCTTGGCGTTGCTGGCGCAACACTTGCCGGCCTGGATACCGGCGCAAGTGCCCATGGGCTATTGGCTGGTGAGCC
TGCTGGGGGCGGTCCTGTTATTGCTGCCCAAGGGCGTGCCCTTTCGGCTGCTGGGCTGGCCGATGTTGCTGCTGGCGGTG
TTTCCGCCTCGGGAATCTATCCCTCACGGGCGGGTCGAGGTGGTGCAACTGGATGTCGGCCAAGGATTGGCGATCATCCT
GCGTACCCGCAACCACGTTCTGCTCTATGACGCCGGGCCGCGCTCCGGGGAGTTCGACCTTGGCGCGCGCGTCGTGCTGC
CTGCGCTGCGCAAGTTGGGGGTTGCGGGGCTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGTGGTGCG
TTGGCCGTTGCTCAAGGGTTGCCGATCAAACGCGTGGTGGGCGGCGAGACAGCACGGCTATCGTCAACGCTCGGTACTCA
AGCCTGTGTCAGTGGCGAGTGGTGGGAATGGGATGGCGTGACCTTCGAGCTATGGCAATGGCCGGATGCGACGGACGGTA
ACCAGATGTCCTGTGTGTTGCTGGTGCAGGCGAATGGCGAACGGTTGCTGCTGACCGGTGACATTGACCGTGAAGCCGAG
CGGGCATTGCTGGCCACACCCCTCGGGGCACCTGTCGATTGGCTGCAAGCGCCCCATCATGGCAGCCGCAGCTCGTCGTC
ATGGCCGTTTCTTCAGCGCCTCGCCCCCAAGGCTGTGTTGATTTCCCGAGGCCGCAGCAATGCCTTCGGCCATCCGCATC
CCCAGGTGTTGGAGCGTTACCAGGCCTTGGGCAGCCTGATTTATGACAGTGCCGAACACGGCGCGCTCCGCCTGCAACTG
GGCACTTTCCAGCCGCCGGAGGCCGCGCGCAGCCAGCGCCGCTTCTGGCGCGAGCCCCCGCCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.892

97.031

0.601
  comA Ralstonia pseudosolanacearum GMI1000

35.5

100

0.383